DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta5 and Psma4

DIOPT Version :9

Sequence 1:NP_652014.1 Gene:Prosbeta5 / 45269 FlyBaseID:FBgn0029134 Length:282 Species:Drosophila melanogaster
Sequence 2:NP_058977.1 Gene:Psma4 / 29671 RGDID:61846 Length:261 Species:Rattus norvegicus


Alignment Length:230 Identity:55/230 - (23%)
Similarity:86/230 - (37%) Gaps:34/230 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 NPLHNLNQIQANGDKTGVKINFDHGTTTLGFKFKGGVLLAVDSRATGGSYIGSQSMKKIVEINQF 113
            :|...|.|::...:..|      |..|.||.....|||||.:.|............:||.::|:.
  Rat    13 SPEGRLYQVEYAMEAIG------HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNED 71

  Fly   114 MLGTLAGGAADCVYWDRVLSKECRL----HELRNKERISVAAASKIMANIAHEYKGMG----LSM 170
            |..::||..:|.    .||:.|.||    :.|:.:|.|........:.:|...|...|    ..:
  Rat    72 MACSVAGITSDA----NVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGV 132

  Fly   171 GMMLAGYDKR-GPGLYYVDSEGSRTPGNLFSVGSGSLYAYGVLDSGY-HWDLEDKEA-------- 225
            .::..|:||. |..||..|..|:........:|:.|..|..:|...| ..::..|.|        
  Rat   133 SLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVL 197

  Fly   226 ------QELGRRAIYHATFRDAYSGGIIRVYHIKE 254
                  .:|....:..||........:|||...||
  Rat   198 NKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKE 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta5NP_652014.1 PTZ00488 38..272 CDD:185666 55/230 (24%)
proteasome_beta_type_5 74..261 CDD:239730 50/205 (24%)
Psma4NP_058977.1 proteasome_alpha_type_4 3..216 CDD:239721 49/212 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..261
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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