DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta5 and Psmb1

DIOPT Version :10

Sequence 1:NP_652014.1 Gene:Prosbeta5 / 45269 FlyBaseID:FBgn0029134 Length:282 Species:Drosophila melanogaster
Sequence 2:NP_035315.1 Gene:Psmb1 / 19170 MGIID:104884 Length:240 Species:Mus musculus


Alignment Length:217 Identity:44/217 - (20%)
Similarity:92/217 - (42%) Gaps:26/217 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 NGDKTGVKINFDHGTTTLGFKFKGGVLLAV----------DSRATGGSYIGSQSMKKIVEINQFM 114
            :|....|::.|.      .:.|.||.:||:          |:|.:.|..|.::...|..::....
Mouse    19 HGSAGPVQLRFS------PYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKT 77

  Fly   115 LGTLAGGAADCVYWDRVLSKECRLHELRNKERISVAAASKIMANIAHEYKGMGLSMGMMLAGYDK 179
            :...:|...||:...:::....::::..|.:.::..|.:.:::.|.:..:.....:..::.|.|:
Mouse    78 VIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDE 142

  Fly   180 RGPG-LYYVDSEGSRTPGNLFSVGSGSLYAYGVLDS--GY-------HWDLEDKEAQELGRRAIY 234
            .|.| :|..|..||....:..:.||.|.....:||:  |:       |..|....|..|.:....
Mouse   143 EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFI 207

  Fly   235 HATFRDAYSGGIIRVYHIKEDG 256
            .|..||.|:|..:|:..:.::|
Mouse   208 SAAERDVYTGDALRICIVTKEG 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta5NP_652014.1 proteasome_beta_type_5 74..261 CDD:239730 41/203 (20%)
Psmb1NP_035315.1 proteasome_beta_type_1 29..240 CDD:239726 42/207 (20%)

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