DRSC/TRiP Functional Genomics Resources

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Protein Alignment cathD and bace1

DIOPT Version :9

Sequence 1:NP_001334713.1 Gene:cathD / 45268 FlyBaseID:FBgn0029093 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_001072485.1 Gene:bace1 / 779940 XenbaseID:XB-GENE-5787150 Length:502 Species:Xenopus tropicalis


Alignment Length:404 Identity:103/404 - (25%)
Similarity:164/404 - (40%) Gaps:94/404 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 ADVGTEL--------QQLRIRYGGGDVPEPLSNYMDAQYYGPIAIGSPPQNFRVVFDTGSSNLWV 99
            |:.|.||        ..||.:.|.|             ||..:.:|:|||...::.||||||..|
 Frog    51 AEKGMELDTNFLDMIDNLRGKSGQG-------------YYVEMRVGTPPQTLNILVDTGSSNFAV 102

  Fly   100 -----PSKKCHLTNIACLMHNKYDASKSKTYTKNGTEFAIQYGSGSLSGYLSTDTVSIA-GLDIK 158
                 |..|.:           |....|:||........:.|..|...|.|.||.|:|. |.::.
 Frog   103 GAAPHPFLKRY-----------YHRQHSRTYRDVRRGVYVPYTQGKWEGELGTDLVTIPHGPNVT 156

  Fly   159 DQTFAEALSEPGLVFV-AAKFDGILGLGYNSIS--VDKVKPPFYAMYEQGLISAPVFS------- 213
            ......|:::....|: .:.::|||||.|..|:  .|.::|.|.::.:|..: ..:||       
 Frog   157 VTANIAAITDSDKFFINGSNWEGILGLAYAEIARPDDTLEPFFDSLVKQTRV-PNIFSLQLCGTG 220

  Fly   214 FYLNR-DPASPEGGEIIFGGSDPNHYTGEFTYLPVTRKAYWQIKMDAASIG--DLQL-CK--GGC 272
            |:.|. |.::..||.::.||.||:.|.|...|.|:.::.|:::.:....|.  ||.: ||  ...
 Frog   221 FHFNESDTSASVGGSMVIGGIDPSLYIGSIWYTPIRKEWYYEVIIVKIEINGQDLHMDCKEYNYD 285

  Fly   273 QVIADTGTSLIAAPLE---------EATSINQKIGGTPIIGGQYVVSC---DLIPQ--LPVIKFV 323
            :.|.|:||:.:..|..         :|.|..:|......:|.|.|  |   ...|.  .|||...
 Frog   286 KSIVDSGTTNLRLPKRVFDAAVKSIKAASSTEKFPDGFWLGEQLV--CWQEGTTPWHIFPVISLY 348

  Fly   324 LGG----KTFELE--GKDYILRVAQMG-------KTICLSGFMGLDIPPPNGPLWILGDVFIGKY 375
            |.|    ::|::.  .:.|:..|..:.       |........|.          ::|.|.:..:
 Frog   349 LMGEVANQSFKITILPQQYLRPVEDIATAQEDCYKFAVSQSTTGT----------VMGAVIMEGF 403

  Fly   376 YTEFDMGNDRVGFA 389
            |..||..|.|:|||
 Frog   404 YVVFDRANKRIGFA 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cathDNP_001334713.1 None
bace1NP_001072485.1 beta_secretase_like 73..438 CDD:133140 97/382 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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