DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nckx30C and CAX9

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:NP_566474.1 Gene:CAX9 / 820622 AraportID:AT3G14070 Length:643 Species:Arabidopsis thaliana


Alignment Length:592 Identity:134/592 - (22%)
Similarity:231/592 - (39%) Gaps:157/592 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 IIGV--IYMFVALAIVCDEFFVPSLDVIIEKLGITDDVAGATFMAAGGSAPELFTSVIGVFVSFD 399
            ::||  :.:|..|.....::|..||:.:.:.|.:...|||.|.:..|..||::|.| |..||..|
plant   140 MLGVWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS-IAAFVGTD 203

  Fly   400 --DVGIGTIVGSAVFNILFVIG---MCALFSKTVLSLTWWPLFRDCSFYSISLLVLIYFFRDNRI 459
              :||:.:::|.|||....|:|   :|....:..:....:  .||.||:..||:.|:......|:
plant   204 KGEVGLNSVLGGAVFVTSVVVGIVSLCVADKEVKIDKNCF--IRDLSFFLFSLVSLLVILMVGRV 266

  Fly   460 FWWEALILFTIYIGYVAFMKWNVQVETCVKKMITKNKVTRVRSTDQLMPAGNAANSSETSMATQP 524
            ....|:...:||:.|...:..||.:....|:.       ::.:...|:|.               
plant   267 TVRIAIAFVSIYVVYAFLVAANVILRKHAKRF-------KLEALTPLLPM--------------- 309

  Fly   525 GGSVTSRAASETRSGPPGSSNAGATGNSSGGGGTSGSTQTGAKFRHGLLQLMIHTIDPLHDGKVD 589
            .|||.|.:..|                                      .:.::|  ||.:.:.:
plant   310 QGSVFSPSVGE--------------------------------------DMPMNT--PLIETETE 334

  Fly   590 EKATQLHAIASLKVLLDATKPQRGGATTSA--ANH-VKINLKETTLADRPN-GNIDTTLDSPSLS 650
            :...:|.::           ||...|:..|  :|| .|:::.:   .|||. |.||.|.:..|.|
plant   335 DGPPRLQSL-----------PQWMWASNVAIYSNHFAKVSVHD---EDRPPWGWIDDTAEVESSS 385

  Fly   651 GRR-PSWIEQRVKIQTRKFSIKAPEIEDEPEPLSMAWPDTARKRLTYVLVAP-LLVPMWLTLPDT 713
            ..: .|.:|..:.|..|   :..|.:|::      .|..|  ..:..|.:|| ||..:|.:..|.
plant   386 CTKFTSLLEIPLTIPRR---LTIPSVEED------TWSKT--YAVASVSLAPVLLASLWSSQDDV 439

  Fly   714 RTPR-GKRFFPVTFIGS--------------------IVWI-AAFSYLMVWWANVA--------- 747
            .... |..:|....|||                    |.|: ..|...:||:..:|         
plant   440 SLQACGVAYFFSVVIGSTLGFLAYKNTEPDHPPRRFLIPWVLGGFIMSIVWFYMIANELVALLVT 504

  Fly   748 -GDTARIPPEVMGLTFLAAGTSIPDLITSVIVARKGFGD---MAVSSSVGSNIFDVTVGLPIPWL 808
             |:...|.|.::.||.||.|.|:.||::::.:...| ||   :|:|......:|:..|||.:   
plant   505 FGEIYGINPSILALTVLAWGNSMGDLVSNIALTMNG-GDGVQIALSGCYAGPMFNTLVGLGM--- 565

  Fly   809 LYGIIYGAPVEVNSVGMVCSITILFMMLVFVVMSIACFRWRM----------NKGLGFTMFLLYF 863
              .:::||..:.....|:.....||..|.|:|:.:.   |.|          ::.||..:..:|.
plant   566 --SMLFGAWSKSPDTYMLPEDKSLFYTLGFLVLGLV---WAMVILPRNDMQPSRTLGVGLIAIYL 625

  Fly   864 AFVAVSL 870
            .||...|
plant   626 IFVTFRL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 42/149 (28%)
Na_Ca_ex 721..871 CDD:279963 46/194 (24%)
CAX9NP_566474.1 PLN03151 1..643 CDD:215604 134/592 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 70 1.000 Domainoid score I3391
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 135 1.000 Inparanoid score I1830
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

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