DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nckx30C and Slc24a1

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:NP_064475.1 Gene:Slc24a1 / 56814 RGDID:620080 Length:1181 Species:Rattus norvegicus


Alignment Length:1144 Identity:354/1144 - (30%)
Similarity:487/1144 - (42%) Gaps:363/1144 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PTTCSKQQQQRQQPAIATAAVG---GAAVQELLRKAAAKDHGALAAATATATAASTTATTATAAT 65
            |||...::|:...|...:.|..   ..:.::.::....|..|...:::.|.|.......|.:.|.
  Rat   131 PTTAGTRRQKENIPPTPSRAPSHFISTSGRQRVKSYTPKPRGGRKSSSPTHTREEGRMHTPSPAG 195

  Fly    66 ASRNSSNTWCHSDD-------ML------SAGRS---RSSSTTIDFNSRR--------------- 99
            |.|..|.|....|.       ||      :||::   |....|..|.:|.               
  Rat   196 APRTISPTSTEKDSETTATYRMLEPRSERTAGKTSLKRMVPNTRTFLTREVETDLVTSPSLVGKN 260

  Fly   100 -----RRGRLRGHAPSDLAMNKQHQATILDECVNIFKRLVLLTLKTISATTITKAKTRSRTAAQ- 158
                 |||. |..:.:.|....|......:|.|....|:           ..|.|.|...|||| 
  Rat   261 TLGSPRRGE-RNSSTTPLRAVLQPTPATSEEQVTASIRM-----------GSTPATTEGSTAAQR 313

  Fly   159 ---------LPATSAASAT--SSRGASAE-QLLHPSSRS--RCRSRRCLRLPIYSILLLCLTTQG 209
                     .||...||.|  ..|.::|. .|:.|..::  ..:..||:                
  Rat   314 IGNPLSGTSTPAVRIASVTDREKRPSTAHGTLVTPQVKAVLTTQVHRCV---------------- 362

  Fly   210 LGLGDAAKPRPAKQHFGGSNSNSPNQNQNHNDVLGGVGAPSQTSGEDEAEIMYPFQSGEQMFGLE 274
                 ..||.||                     :....:||.|:      |::|           
  Rat   363 -----VVKPAPA---------------------VPMTPSPSMTA------ILFP----------- 384

  Fly   275 EDQEQDPELNSNAVPGSDEDNAGNQRGINDTHNDNSTTTKTPLFPKDLFTKEQLENGAVILHIIG 339
                :.|....:|:|          .|..:.|....       :|.|||:.|....|.|:|||.|
  Rat   385 ----EAPTSGPSALP----------PGWPNLHPKAE-------YPPDLFSVEDRRQGWVVLHIFG 428

  Fly   340 VIYMFVALAIVCDEFFVPSLDVIIEKLGITDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIG 404
            :.|:||||||||||:|||:|.||.:||.|::||||||||||||||||||||:||||:|..:||||
  Rat   429 MTYVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIG 493

  Fly   405 TIVGSAVFNILFVIGMCALFSKTVLSLTWWPLFRDCSFYSISLLVLIYFFRDNRIFWWEALILFT 469
            |||||||||||||||.|||||:.:|:|||||||||.|||.:.|.:||.||.|:.|.|||:|:|..
  Rat   494 TIVGSAVFNILFVIGTCALFSREILNLTWWPLFRDVSFYILDLSMLIVFFLDSLIAWWESLLLLL 558

  Fly   470 IYIGYVAFMKWNVQVETCVKKMITKNKVTRV---------------------------------- 500
            .|..||..||||.|:|..||:.:::..|.:|                                  
  Rat   559 AYALYVFTMKWNKQIERWVKEQLSRRPVAKVMALGDLSKPSDGAIEENEQQDNKKLKLPSVLTRG 623

  Fly   501 -----------RST------DQLMPAGNA-----------------------ANSSETSMATQPG 525
                       |||      ..|.|.|.|                       ::|.|...|..|.
  Rat   624 SSSASLHNSIIRSTIYHLMLHSLDPLGEARPSKDKQESLNQEARVLPQTKAESSSDEEEPAELPA 688

  Fly   526 GSVTSRAASETR----------------------SGPPGSSNAGATGNSSGGGGT---------- 558
            .:||...|.|.:                      :|..|.....|.|.....|.|          
  Rat   689 VTVTPAPAPEDKGDQEEDPGCQEDVDEAEHRGDMTGEEGERETEAEGKKDEEGETEAERKEDGQE 753

  Fly   559 -----------SGSTQT-GAKFRHGLLQLMIHTIDPLHDGKVDEKATQLHAIASLKVLLDATKPQ 611
                       .|.|:: |...:.|..:......|  |:|:.:.:..::......:.  :.|:.:
  Rat   754 EETETKGKEKQEGETESEGKDEQEGETEAEGKEAD--HEGETEAEGKEVEHEGETEA--EGTEDE 814

  Fly   612 RGGAT---------------------------------------------------TSAANHV-- 623
            :.|.|                                                   |.|..:|  
  Rat   815 QEGETEAEGKEVEQEGETEAEGKEVEHEVETEAERKETNHEGETEAEGKEADHEGETEAEGNVEH 879

  Fly   624 --------KINLKETTLA---DRPNGNIDTTLDSPSL---SGRRPSWIEQRVKI----------- 663
                    |:..:..|.|   |...|..:|..|...:   .|...:..|.:.:.           
  Rat   880 QGETEAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDGEGEAEANAEDQCETAQGEKGADGGG 944

  Fly   664 ----------------QTRKFSIKAPEIEDEPEPLSMAWPDTARKRLTYVLVAPLLVPMWLTLPD 712
                            :..:...:..|.|:..||||:.||::.:|:..|:.:.|::.|:|||:||
  Rat   945 GSDGGDSEEEEDEEDEEEEEEEEEEEEEEESEEPLSLEWPESRQKQAIYLFLLPIVFPLWLTIPD 1009

  Fly   713 TRTPRGKRFFPVTFIGSIVWIAAFSYLMVWWANVAGDTARIPPEVMGLTFLAAGTSIPDLITSVI 777
            .|....::||.:||:|||:|||.|||||||||:..|:|..|..|:||||.|||||||||||||||
  Rat  1010 VRRQEARKFFVITFLGSIIWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVI 1074

  Fly   778 VARKGFGDMAVSSSVGSNIFDVTVGLPIPWLLYGIIYG-APVEVNSVGMVCSITILFMMLVFVVM 841
            |||||.|||||||||||||||:|||||:||||:.:|.. .|:.|:|.|:.|:|.:||:||:||:.
  Rat  1075 VARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINALQPIPVSSNGLFCAIVLLFLMLLFVIF 1139

  Fly   842 SIACFRWRMNKGLGFTMFLLYFAFVAVSLMFEYDVITCP 880
            |||..:|||||.||||||||||.|:.:|:|.|..:|:||
  Rat  1140 SIASCKWRMNKILGFTMFLLYFVFLVISVMLEDRIISCP 1178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 101/143 (71%)
Na_Ca_ex 721..871 CDD:279963 104/150 (69%)
Slc24a1NP_064475.1 2A1904 1..1181 CDD:273344 354/1144 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..232 21/100 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..276 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..323 7/22 (32%)
Na_Ca_ex 425..553 CDD:279963 94/127 (74%)
Alpha-1 461..501 34/39 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 598..617 0/18 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 650..983 44/336 (13%)
14 X approximate tandem repeats 730..905 21/178 (12%)
ASF1_hist_chap <746..866 CDD:304562 10/123 (8%)
Prothymosin 837..918 CDD:281265 10/80 (13%)
Na_Ca_ex 1018..1169 CDD:279963 104/150 (69%)
Alpha-2 1061..1092 29/30 (97%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338079
Domainoid 1 1.000 231 1.000 Domainoid score I2349
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10846
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1587
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.950

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