DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nckx30C and slc24a6a

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:XP_009289475.1 Gene:slc24a6a / 561209 ZFINID:ZDB-GENE-100922-39 Length:639 Species:Danio rerio


Alignment Length:608 Identity:223/608 - (36%)
Similarity:329/608 - (54%) Gaps:90/608 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 NDNSTTTKTPL--FPKDLFTKEQLENGAVILHIIGVIYMFVALAIVCDEFFVPSLDVIIEKLGIT 369
            |..|:|.:..:  ||:|:|||.|..:||::||:...:|||.|||||||.||||||:.|.|.|.::
Zfish    79 NQTSSTPRAAIHEFPQDIFTKGQRRHGAILLHVFCAVYMFYALAIVCDVFFVPSLEKICENLHLS 143

  Fly   370 DDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGMCALFSKTVLSLTWW 434
            :|||||||||||.||||||||:||||::..|:|:||||||||||||.:||:|.:|:...::||||
Zfish   144 EDVAGATFMAAGSSAPELFTSLIGVFITKGDLGVGTIVGSAVFNILVIIGVCGIFAGQTITLTWW 208

  Fly   435 PLFRDCSFYSISLLVLIYFFRDNRIFWWEALILFTIYIGYVAFMKWNVQVETCVKKMI-TKNKVT 498
            |||||..||.:|:|.||....|.::.|||.:||.::|..|:..||:|.|:...|::.. ...:..
Zfish   209 PLFRDSIFYILSVLALILIIYDEKVIWWETIILISMYGVYILIMKFNSQIWGWVEQRFGIPGQPC 273

  Fly   499 RVRSTDQLMPAGNAANSSETSMATQPGGSVTSRAASETRSGPPGSSNAGATGNSSGGGGTSGSTQ 563
            .|.|..:.:..|.|:...:|||.....|                 .|||  |..|.         
Zfish   274 LVSSLRRDVSVGEASPHCDTSMILLKKG-----------------QNAG--GQDSP--------- 310

  Fly   564 TGAKFRHGLLQLMIHTIDPLHDGKVDEKATQLHAIASLKVLLDATKPQRGGATTSAANHVKINLK 628
                      .:|:..:..||..:..      .:.|||:|::......|  ...|.|..:.|..:
Zfish   311 ----------VVMVDELMSLHPHQFS------FSEASLRVMITPHFSPR--TRLSMAGRMLITER 357

  Fly   629 ETTLADRPNGNI------DTT-LDSPSLSGRRPSWIEQRVKIQTRKFSIKAP------------- 673
            :..:.:|..|:.      ||. .|.|.:.. .|..:|....:::....::.|             
Zfish   358 QRLIRNRSPGDSSGSGAGDTPGQDGPGMEA-VPWGLENGGALESETQPLEEPRRRSQGGELERVA 421

  Fly   674 ---------------EIEDEP-EPLSMAWPDTARKRLTYVLVAPLLVPMWLTLPDTRTPRGKRFF 722
                           |.::|| .|.::  |:...::..::...||...::.|:|:...||.:|:|
Zfish   422 DIEDTQPKDDEEDEEEADEEPFRPFTV--PEGRWEQAKWMFSWPLSCLLYYTVPNCVLPRWERWF 484

  Fly   723 PVTFIGSIVWIAAFSYLMVWWANVAGDTARIPPEVMGLTFLAAGTSIPDLITSVIVARKGFGDMA 787
            .|||:.|.:|||.|||||||...:...|..||..|||:||||||||:||.:.|:||||:|.||||
Zfish   485 MVTFVASTLWIAVFSYLMVWMVTIISFTLDIPDVVMGITFLAAGTSVPDCMASLIVARQGMGDMA 549

  Fly   788 VSSSVGSNIFDVTVGLPIPWLLYGII--YGAPVEVNSVGMVCSITILFMMLVFVVMSIACFRWRM 850
            ||:|:||||||:.:||..||.|..::  ||:.|.:||.|:|.|:.:|...:...|:|:....||:
Zfish   550 VSNSIGSNIFDILLGLGFPWALRTLVVDYGSTVSINSKGLVYSVILLLASVFLTVLSVHLNHWRL 614

  Fly   851 NKGLGFTMFLLYFAFVAVSLMFE 873
            ::.||..:..||..|:..|:.||
Zfish   615 DRRLGLGLMFLYAIFLLCSICFE 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 85/143 (59%)
Na_Ca_ex 721..871 CDD:279963 74/151 (49%)
slc24a6aXP_009289475.1 Na_Ca_ex <85..637 CDD:332332 218/600 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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