DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nckx30C and slc24a4a

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:XP_005158898.1 Gene:slc24a4a / 550467 ZFINID:ZDB-GENE-050417-291 Length:621 Species:Danio rerio


Alignment Length:595 Identity:218/595 - (36%)
Similarity:326/595 - (54%) Gaps:87/595 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 GINDTHNDNSTTTKTPLFPKDLFTKEQLENGAVILHIIGVIYMFVALAIVCDEFFVPSLDVIIEK 365
            |.|:|...|.|......||:||||.:|...|||:|||...:|||:|||||||::||.||:.|.||
Zfish    85 GDNETQEKNCTAPAIHEFPEDLFTNQQRSQGAVLLHIFAALYMFLALAIVCDDYFVTSLEKICEK 149

  Fly   366 LGITDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGMCALFSKTVLS 430
            |.:::|||||||||||.||||||.|:||||::..|||:||||||||||||.:||:|.:|:..|:.
Zfish   150 LHLSEDVAGATFMAAGSSAPELFASIIGVFITHGDVGVGTIVGSAVFNILCIIGVCGIFAGQVVF 214

  Fly   431 LTWWPLFRDCSFYSISLLVLIYFFRDNRIFWWEALILFTIYIGYVAFMKWNVQVETCVKKMITKN 495
            ||.:.:|||.|:|.||::.||.|..|:.|.|||:|:|..:|:||:..||:|    |.::.:....
Zfish   215 LTKYAVFRDSSYYIISVIALIVFIYDDEILWWESLVLIVMYLGYIIVMKFN----TSLQNLFNGK 275

  Fly   496 KVTRVRSTDQLMPAGNAANSSETSMATQPGGSVTSRAASETRSGPPGSSNAGATGNSSGGGGTSG 560
            :..||.:       |||.:|.     .:||.....:...:. |.|                    
Zfish   276 EDKRVTN-------GNAVSSE-----MEPGNDCFEQFWDDP-SWP-------------------- 307

  Fly   561 STQTGAKFRHGLLQLMIHTIDPLHDGKVDEKATQLHAIASLKVLLDATKPQ----RGGATTSAAN 621
                              .:.|:...|:..:.    ::..:..:::::.|.    ..|......|
Zfish   308 ------------------LLAPVKPNKIYTRG----SVVMVDEMMNSSPPHYRFPEAGLRVMITN 350

  Fly   622 HV--KINLK---------ETTLADRPNGNIDTTLDSPSLSGRRPSWIEQRVKIQTRKFSIKAPEI 675
            |.  |..|:         :..|....||     :||..:|.::...:|.. .:...|.|   .|.
Zfish   351 HFGPKTRLRMASRLIINEQQRLVKSANG-----VDSVLVSDQKADTMENG-NVAEDKLS---EEQ 406

  Fly   676 EDEPEPLSMAWPDTARKRLTYVLVAPLLVPMWLTLPDTRTPRGKRFFPVTFIGSIVWIAAFSYLM 740
            |:|..|..:  |:.|...:.:.:..|:.:.::.|:|:....|.:..|.::|..|.||||||||::
Zfish   407 ENEISPFRL--PEGAMDTVKFFISWPISLLLYFTIPNCAKKRWECCFMLSFFLSTVWIAAFSYIL 469

  Fly   741 VWWANVAGDTARIPPEVMGLTFLAAGTSIPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPI 805
            ||...:.|.|..||..:||:||||||||:||.|.|:||||:|.||||||:::|||:||:.|||.:
Zfish   470 VWMVTIVGYTLGIPDVIMGITFLAAGTSVPDCIASLIVARQGLGDMAVSNTIGSNVFDILVGLGV 534

  Fly   806 PWLL--YGIIYGAPVEVNSVGMVCSITILFMMLVFVVMSIACFRWRMNKGLGFTMFLLYFAFVAV 868
            ||.:  ..:.||:.|::||.|:|.|:.:|...:...|:.|...|||::..||..:.:||..|:..
Zfish   535 PWGIQTMAVNYGSVVKINSRGLVYSVVLLLGSVALTVLGIHVNRWRLDLRLGIYVLVLYAIFLTF 599

  Fly   869 SLMFEYDVIT 878
            |:|.||:|.|
Zfish   600 SIMIEYNVFT 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 85/143 (59%)
Na_Ca_ex 721..871 CDD:279963 72/151 (48%)
slc24a4aXP_005158898.1 TIGR00367 119..596 CDD:273039 196/546 (36%)
Na_Ca_ex 120..262 CDD:279963 84/141 (60%)
Na_Ca_ex 451..602 CDD:279963 72/150 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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