DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nckx30C and Slc8b1

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:NP_001017488.1 Gene:Slc8b1 / 498185 RGDID:1565818 Length:585 Species:Rattus norvegicus


Alignment Length:609 Identity:140/609 - (22%)
Similarity:239/609 - (39%) Gaps:168/609 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 FPKDLFTKEQLENGAVILHIIGVIYMFVALAIVCDEFFVPSLDVIIEKLGITDDVAGATFMAAGG 382
            ||.:|...      |:.|::..::|:|:.|.:...:||.|:|..|...|.::.:|||.||:|.|.
  Rat    91 FPPNLLPL------AITLYVFWLLYLFLILGVTAAKFFCPNLSAISTSLKLSHNVAGVTFLAFGN 149

  Fly   383 SAPELFTSVIGVFVSFDD-----VGIGTIVGSAVFNILFVIGMCALFSKTVLSLTWWPLFRDCSF 442
            .||::|:::    |:|.|     :.||.:.|:.|.....|.|...:....:.:..  |..||.:|
  Rat   150 GAPDIFSAL----VAFSDPRTAGLAIGALFGAGVLVTTVVAGGITILRPFMAASR--PFLRDITF 208

  Fly   443 YSISLLV---LIYFFRDNRIFWWEALILFTIYIGYVAFMKWNVQVETCVKKMITKNKVTRVRSTD 504
            |.:::.:   .:|..|...::....|.|:..|:..|....|..|      :..:::.|..:..|.
  Rat   209 YMVAVFLTFTALYLGRITLVWALGYLGLYVFYVVTVIICTWVYQ------RQRSRSLVHSISETP 267

  Fly   505 QLMPAGNAANSSETSMATQPGGSVTSRAASETRSGPPGSSNAGATGNSSGGGGTSGSTQTGAKFR 569
            :|:     .:|.|..|                      |||             :.|...|.::|
  Rat   268 ELL-----TDSEEDQM----------------------SSN-------------TNSYDYGEEYR 292

  Fly   570 HGLL------QLMIHTIDPLHDGKVDEKATQLHAIASLKVLLDATKPQRGGATTSAANHVKINLK 628
            ..||      |:::..::||     |.:..:..:| |.|:|..|..|            |:..|.
  Rat   293 PLLLGEETTGQILLQALNPL-----DYRKWRTQSI-SCKLLKVAKLP------------VEFLLL 339

  Fly   629 ETTLADRPNGNIDTTLDSPSLSGRRPSWIEQRVKIQTRKFSIKAPEIEDEPEPLSMAWPDTARKR 693
            .|.....|        |....:.:||....|.|                 ..||           
  Rat   340 LTVPVVDP--------DKDDRNWKRPLNCLQLV-----------------ISPL----------- 368

  Fly   694 LTYVLVAPL------------LVPMWLTLPDTRTPRGKRFFPVTFIGS-------IVWIAAFSYL 739
               |||..|            |:|:|..:...    |.....|||..:       :.|:.||...
  Rat   369 ---VLVLTLQSGVYGIYEIGGLLPVWAVVVIV----GTALASVTFFATSNSEPPRLHWLFAFLGF 426

  Fly   740 M--VWWANVA-----------GDTARIPPEVMGLTFLAAGTSIPDLITSVIVARKGFGDMAVSSS 791
            :  ..|.|.|           |...|:...|:|||.||.|.||.|..:...:||:|:..||.|:.
  Rat   427 LTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSAC 491

  Fly   792 VGSNIFDVTVGLPIPWLLYGI-IYGAPVEVNSVGMVCSI--TILFMMLVFVVMSIACFRWRMNKG 853
            .|..||::.||:.:..||..: .:.:.|::...|::..:  :.|.:.|||.::|:....::::|.
  Rat   492 FGGIIFNILVGVGLGCLLQIVRSHASEVKLEPDGLLVWVLASALGLSLVFSLVSVPLQCFQLSKA 556

  Fly   854 LGFTMFLLYFAFVAVSLMFEYDVI 877
            .|..:.|.|..|:.|.|:.|:.||
  Rat   557 YGLCLLLFYICFIVVVLLTEFGVI 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 39/151 (26%)
Na_Ca_ex 721..871 CDD:279963 47/172 (27%)
Slc8b1NP_001017488.1 PLN03151 63..584 CDD:215604 140/609 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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