DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nckx30C and ncx-9

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:NP_504342.2 Gene:ncx-9 / 182576 WormBaseID:WBGene00003574 Length:701 Species:Caenorhabditis elegans


Alignment Length:641 Identity:146/641 - (22%)
Similarity:261/641 - (40%) Gaps:118/641 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 FTKEQLENGA-VILHIIGVIY---MFVALAIVCDEFFVPSLDVIIEKLGITDDVAGATFMAAGGS 383
            :.|.|...|. |||.|:|::|   :||.::.:.|:||.|::..|:..|.:::.:||.||:|.|..
 Worm    90 YVKCQYNIGVRVILIILGILYLIILFVIMSSIADDFFCPAISGIVSHLRMSESIAGVTFLAFGNG 154

  Fly   384 APELFTSVIGVFVS---FDDVGIGTIVGSAVFNILFVIGMCALFSKTVLSLTWWPLFRDCSFYSI 445
            ||::|:|:..|..:   ..|:.:|.:.|:::| :..|:....:|:|: ..:...|..||..||..
 Worm   155 APDVFSSISSVLTTPKPKADLALGDLFGTSIF-VTTVVLAIIIFTKS-FKVAIIPTLRDLIFYMT 217

  Fly   446 SLLVLIY-FFRDNRIFWWEALILFTIYIGYVA----------------FMKWNVQVETCVKK--- 490
            :|..::: |.:.::|..|.......||..||.                ..|.|.::|..:.:   
 Worm   218 TLAFIVFCFLKFDKIEVWMPATFLGIYGVYVVTVIILGIYRTHRKKRNLKKKNKELEDFLSRPSS 282

  Fly   491 -------------------------------MITKNKVTRV---RSTDQLMPAGNAANSSETSMA 521
                                           ...|| :||.   |:|:.    .|..|.:|....
 Worm   283 AASTTPIFGAMKLKEETISVSALFHFMIGYSQFIKN-LTRANLKRTTNN----NNNDNKNEKRGI 342

  Fly   522 TQPGGSVTSRAASETRSGPPGSSNAGATGNSS--GGGGTSGSTQTGAKFRHGLLQLMIHTIDPLH 584
            ...|.|......||.:.......|...|...|  ......||...|.:.:.|...   ||:...|
 Worm   343 VNLGFSEPYSIPSERKISTIFKQNTFETDLESLESLADLDGSDDEGREEKFGYAH---HTVFTSH 404

  Fly   585 DGKVDEKATQLHAIASLKVLLDATKPQRGGATTSAANHVK------------INLK-ETTLADRP 636
            |        |:..:||....::.|..:.........||:|            |.:| .|.:...|
 Worm   405 D--------QISLVASEIEEIEITTWRSWDWVWDLFNHLKSWPSRDEFSEMNIFIKIVTVIKVVP 461

  Fly   637 NGNIDTTLDSPSLSGRRPSWI-EQRVKIQTRKFSIKAPEIEDEPEPLSMAWPDTARKRLTYVLVA 700
            ......|:.|..:|..:|.:| .....||...|||:...:    :|...: |......|.:..:.
 Worm   462 VFFFKLTVPSNEMSWCKPLFILHCFASIQFALFSIQIITL----KPFDGS-PGLWLYGLGFSAIL 521

  Fly   701 PLLVPMWLTLPDTRTPRGKRFFPVTFIGSIVWIAAFSYLMVWWANVAGDTARIPPEVMGLTFLAA 765
            .::...:|.|...:....:.:..:.|:.||.||.|.|..:|....:.|....:..|::|||.:|.
 Worm   522 AMVAMYFLPLSKEQKYYKEIYSYLGFLMSIAWIYATSNEIVSVVTMIGVVTGLSMELLGLTIMAW 586

  Fly   766 GTSIPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPIPWLLYGIIYGAPVEVNSVGMVCSIT 830
            ...|.|::..:.|.::|:..||:::::|..:|::.:|..:|:.: ....|..:|: .:..|..:.
 Worm   587 SNCIGDIVADIAVVKQGYPKMAMAAAIGGPLFNLLIGFGLPFTI-AAAQGKEMEL-LINPVYRLL 649

  Fly   831 ILFMMLVFVVMSIACFRWRMNKGLGFTM-----FLLYFAFVAVSLMF----EYDVI 877
            :||:.:..|...:|.|..|      ||:     .||.|.|| |.|:|    |:.|:
 Worm   650 MLFLGISLVTTFVALFIQR------FTVRRPHAVLLIFIFV-VFLIFICLAEFHVL 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 42/166 (25%)
Na_Ca_ex 721..871 CDD:279963 41/154 (27%)
ncx-9NP_504342.2 PLN03151 68..689 CDD:215604 143/630 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.