DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nckx30C and ncx-8

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:NP_504341.1 Gene:ncx-8 / 182575 WormBaseID:WBGene00003573 Length:703 Species:Caenorhabditis elegans


Alignment Length:623 Identity:138/623 - (22%)
Similarity:268/623 - (43%) Gaps:81/623 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 FTKEQLENGA-VILHIIGVIY---MFVALAIVCDEFFVPSLDVIIEKLGITDDVAGATFMAAGGS 383
            :.|.|...|| |:|.|:|:||   :||.::.:.|:||.||:..|:..|.:::.:||.||:|.|..
 Worm    91 YVKCQYNIGARVVLIIVGIIYLIFLFVVMSTIADDFFCPSISGIVTHLKMSESIAGVTFLAFGNG 155

  Fly   384 APELFTSVIGVFVSFDD---VGIGTIVGSAVFNILFVIGMCALFSKTVLSLTWWPLFRDCSFYSI 445
            ||::|.|:..|..:...   :.:|.:.|:::| :..|:....:|:|: ..:...|..||..||.|
 Worm   156 APDVFGSISSVLSTPKPKAALALGDLFGTSIF-VTTVVLAIIIFTKS-FKVAIIPTLRDLIFYMI 218

  Fly   446 SLLVLIY-FFRDNRIFWWEALILFTIYIGY----VAFMKWNVQVETCVKKMITKNK------VTR 499
            :|..:.: |.:.::|..|.......||..|    :||..:..:.:...||...:::      ::|
 Worm   219 TLAFITFCFLKFDKIEVWMPATFLGIYAVYLLTVIAFSIYRTRRKNLKKKKQLESEKDDESAISR 283

  Fly   500 VRSTDQLMPAGNAANSSETSMATQP------GGSVTSRAASET------RSGPPGSSNAGATGNS 552
            ..|....||..........||:...      |.|...:..:.|      .:...|..|.|.:.:.
 Worm   284 PESVASNMPICEKLEKKTESMSVSTLFHVMVGLSRFMKKLNRTNKIQSIENKKQGFVNEGFSESL 348

  Fly   553 SGGGGT-SGSTQTGAKFRHGLLQL---MIHTIDPLH----DGKVDEKATQLHAIASL--KVLLDA 607
            .....| ..:......||:..|..   .:.|:|.:.    :|:.:|.|...|.:.:.  ::.|.|
 Worm   349 DADELTLKRNRMISLIFRNKTLDTDLESMKTLDEMESSDDEGREEEFAYAHHTVFTSHDQMSLAA 413

  Fly   608 TKPQRGGATTSAANHVKINL-------------KETTLADR--------PNGNIDTTLDSPSLSG 651
            |:.:....||..:....|:|             .|..:..:        |:..:..|:.|..:|.
 Worm   414 TEFEFRELTTWRSRDWIIDLLYHLKPWPSREEFSEMNIFVKIIMIIRIIPSFFMKMTIPSNEMSW 478

  Fly   652 RRPSW-IEQRVKIQTRKFSIKAPEIEDEPEPLSMAWPDTARKRLTYVLVAPLLVPMWLTLPDTRT 715
            .:|.: :.....||...|||:...:    :|...: |......|.:.....||...:|.|.....
 Worm   479 CKPLFLLHCFASIQFALFSIQIINL----KPFDGS-PGLWLYGLAFSATIALLALCFLPLNKELK 538

  Fly   716 PRGKRFFPVTFIGSIVWIAAFSYLMVWWANVAGDTARIPPEVMGLTFLAAGTSIPDLITSVIVAR 780
            ...:.:..:.|:.||.||.|.:..::....:.|....:..|::|||.::....|.|::..:.|.:
 Worm   539 YHKEVYSYLGFLMSIAWIYATANEIISVMTMVGVVTGLSQELLGLTVMSWSDCIGDIVADIAVIK 603

  Fly   781 KGFGDMAVSSSVGSNIFDVTVGLPIPWLLYGIIYGAPVEVNSVGMVCSITILFMMLVFVVMSIAC 845
            :|:..||:::::|..:|::.:|..:|:.: ....|..::: .:..|..|.:||:.:..|...:|.
 Worm   604 QGYPKMAMAAAIGGPLFNLLIGFGLPFTI-ASAQGKQIDL-IINPVYRILLLFLGISLVTTFVAL 666

  Fly   846 F------RWRMNKGLGFTMFLLYFAFVAVSLMFEYDVI 877
            |      ||.....|.| :|:.:..||.::   |:.|:
 Worm   667 FIERFTVRWPHAVALIF-IFINFVIFVCLA---EFHVL 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 45/154 (29%)
Na_Ca_ex 721..871 CDD:279963 36/155 (23%)
ncx-8NP_504341.1 PLN03151 61..628 CDD:215604 120/543 (22%)
Na_Ca_ex 107..253 CDD:279963 42/147 (29%)
Na_Ca_ex 544..681 CDD:279963 31/138 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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