DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nckx30C and slc24a4b

DIOPT Version :9

Sequence 1:NP_652011.3 Gene:Nckx30C / 45248 FlyBaseID:FBgn0028704 Length:881 Species:Drosophila melanogaster
Sequence 2:XP_002665845.2 Gene:slc24a4b / 100334346 ZFINID:ZDB-GENE-081031-75 Length:636 Species:Danio rerio


Alignment Length:587 Identity:225/587 - (38%)
Similarity:320/587 - (54%) Gaps:94/587 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 NDTHNDNSTTTKTPLFPKDLFTKEQLENGAVILHIIGVIYMFVALAIVCDEFFVPSLDVIIEKLG 367
            |.|...|.|......||.|:||..:.::|||:||||..:|||:|||||||::||.||:.|.|||.
Zfish   123 NTTEEKNCTEPAIHEFPDDVFTNAERKSGAVLLHIIAALYMFLALAIVCDDYFVTSLEKICEKLN 187

  Fly   368 ITDDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIGTIVGSAVFNILFVIGMCALFSKTVLSLT 432
            :::|||||||||||.||||||.||||||::..|||:||||||||||||.:||:|.:|:..|:.||
Zfish   188 LSEDVAGATFMAAGSSAPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGIFAGQVVLLT 252

  Fly   433 WWPLFRDCSFYSISLLVLIYFFRDNRIFWWEALILFTIYIGYVAFMKWNVQVETCVKKMITKNKV 497
            ||.:|||..||.:|::.||.|..|.:|.|||:|:|..:|..|:..||:|.:::....:...||  
Zfish   253 WWAVFRDSFFYILSVVALIVFIYDEKIVWWESLVLVVMYACYILIMKFNSRLQKFFTRKGNKN-- 315

  Fly   498 TRVRSTDQLMPAGNAANSSE-----TSMATQPGGSVTSRAASETRSGPPGSSNAGATGNSSGGGG 557
                     :..||||..||     ||.....|..|  .......:.||                
Zfish   316 ---------VANGNAAAGSELEDVKTSKIYSRGSVV--MVDEIINASPP---------------- 353

  Fly   558 TSGSTQTGAKFRHGLLQLMIHTIDPLHDGKVDEKATQLHAIASLKVLLDATKPQRGGATTSAANH 622
                   ..:|....|::|:..    |.|    ..|:|...:.|.:    |:.||   ...:||.
Zfish   354 -------NYRFPEAGLRVMVTN----HFG----PKTRLRMASRLII----TERQR---LVQSANG 396

  Fly   623 VKINLKETTLAD-RP---NGNIDTTLDSPSLSGRRPSWIEQRVKIQTRKFSIKAPEIEDEPEPLS 683
            |     ||.:.| :|   |||:.....:           |::....|..|.:             
Zfish   397 V-----ETAVVDGKPDIENGNVPEDKST-----------EEKESELTTPFRL------------- 432

  Fly   684 MAWPDTARKRLTYVLVAPLLVPMWLTLPDTRTPRGKRFFPVTFIGSIVWIAAFSYLMVWWANVAG 748
               ||....|..:::..|||:.::.|:|:....|.:::|.::||.|.||||.|||.|||...:.|
Zfish   433 ---PDGCMNRTKWLISWPLLLILFFTIPNCAKSRWEKYFMLSFILSTVWIAVFSYFMVWMVTIIG 494

  Fly   749 DTARIPPEVMGLTFLAAGTSIPDLITSVIVARKGFGDMAVSSSVGSNIFDVTVGLPIPWLL--YG 811
            .|..||..:||:||||||||:||.|.|:||||:|.||||||:::|||:||:.|||.:||.|  ..
Zfish   495 YTLGIPDVIMGITFLAAGTSVPDCIASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWALQTMA 559

  Fly   812 IIYGAPVEVNSVGMVCSITILFMMLVFVVMSIACFRWRMNKGLGFTMFLLYFAFVAVSLMFEYDV 876
            :.||:.|.:||.|::.|:.:|...:...::.|....|:::..||..:.|||..|:..|:|.||:|
Zfish   560 VNYGSVVMINSRGLLYSVVLLLGSVALTILGIHLNHWKLDFKLGVYVLLLYAVFLCFSIMIEYNV 624

  Fly   877 IT 878
            .|
Zfish   625 FT 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nckx30CNP_652011.3 Na_Ca_ex 336..480 CDD:279963 87/143 (61%)
Na_Ca_ex 721..871 CDD:279963 71/151 (47%)
slc24a4bXP_002665845.2 TIGR00367 155..581 CDD:273039 198/508 (39%)
Na_Ca_ex 156..298 CDD:279963 86/141 (61%)
Na_Ca_ex 467..619 CDD:279963 71/151 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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