DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-1 and atp5mc1

DIOPT Version :9

Sequence 1:NP_001247111.1 Gene:VhaPPA1-1 / 45247 FlyBaseID:FBgn0028662 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_998193.1 Gene:atp5mc1 / 406301 ZFINID:ZDB-GENE-040426-1966 Length:138 Species:Danio rerio


Alignment Length:146 Identity:37/146 - (25%)
Similarity:56/146 - (38%) Gaps:51/146 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQFSMETALSQAAIQN-TNWF--- 137
            :::.||.:|    ....|||:|....|            :.||.:: ..:|:||:.| |..|   
Zfish    12 AVIRGGSRA----LARPISVVFSRPEA------------RSEQAAL-LPVSEAALLNLTRGFQTS 59

  Fly   138 -------SGYLIFGAGLAVGLVNLFCGIAVGIVGSGAALSD---------AANAALFVKILIVEI 186
                   :.....|||.|          .||:.||||.:..         |.|.:|..::....|
Zfish    60 VASRDIDTAAKFIGAGAA----------TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAI 114

  Fly   187 FG----SAIGLFGLIV 198
            .|    .|:|||.|:|
Zfish   115 LGFALSEAMGLFCLMV 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-1NP_001247111.1 ATP-synt_Vo_c_ATP6F_rpt1 51..113 CDD:349417 8/35 (23%)
ATP-synt_Vo_c_ATP6F_rpt2 138..202 CDD:349418 21/74 (28%)
atp5mc1NP_998193.1 ATP9 64..138 CDD:164765 21/77 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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