DRSC/TRiP Functional Genomics Resources

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Protein Alignment VhaPPA1-1 and atp6v0b

DIOPT Version :9

Sequence 1:NP_001247111.1 Gene:VhaPPA1-1 / 45247 FlyBaseID:FBgn0028662 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_955855.2 Gene:atp6v0b / 321724 ZFINID:ZDB-GENE-030131-443 Length:206 Species:Danio rerio


Alignment Length:194 Identity:123/194 - (63%)
Similarity:148/194 - (76%) Gaps:3/194 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FLAVATILTLYFVMTGKGERVSVGWFLASSNPYMWACLGIGLSVSLSVVGAALGIHTTGTSIVGG 81
            |.:...|:.:.:.:...|.|..|.|||..::|:|||.|||||::||||||||.||:.||:||:||
Zfish    16 FWSTMVIVGICYTIFDLGFRFDVAWFLTETSPFMWANLGIGLAISLSVVGAAWGIYITGSSIIGG 80

  Fly    82 GVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAG 146
            ||||||||||||:|:||||||||||:|.|||:|...|.||..|   ...|.:.|:.:||.:||||
Zfish    81 GVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNLAENFSGTT---PETIGSKNYQAGYSMFGAG 142

  Fly   147 LAVGLVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGIYMTSKSKMGD 210
            |.||..||||||.||||||||||:||.||.|||:|||||||||||||||:||.|..|||.|||:
Zfish   143 LTVGFSNLFCGICVGIVGSGAALADAQNANLFVRILIVEIFGSAIGLFGVIVAILQTSKVKMGN 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-1NP_001247111.1 ATP-synt_Vo_c_ATP6F_rpt1 51..113 CDD:349417 49/61 (80%)
ATP-synt_Vo_c_ATP6F_rpt2 138..202 CDD:349418 50/63 (79%)
atp6v0bNP_955855.2 PRK08344 49..200 CDD:236246 108/153 (71%)
ATP-synt_C 51..113 CDD:278563 49/61 (80%)
ATP-synt_C 137..197 CDD:278563 47/59 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576388
Domainoid 1 1.000 100 1.000 Domainoid score I6991
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2986
Inparanoid 1 1.050 235 1.000 Inparanoid score I3371
OMA 1 1.010 - - QHG53850
OrthoDB 1 1.010 - - D1408246at2759
OrthoFinder 1 1.000 - - FOG0002690
OrthoInspector 1 1.000 - - oto39168
orthoMCL 1 0.900 - - OOG6_102000
Panther 1 1.100 - - LDO PTHR10263
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1637
SonicParanoid 1 1.000 - - X2155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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