DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VhaPPA1-1 and Atp6v0b

DIOPT Version :9

Sequence 1:NP_001247111.1 Gene:VhaPPA1-1 / 45247 FlyBaseID:FBgn0028662 Length:212 Species:Drosophila melanogaster
Sequence 2:NP_291095.1 Gene:Atp6v0b / 114143 MGIID:1890510 Length:205 Species:Mus musculus


Alignment Length:194 Identity:123/194 - (63%)
Similarity:150/194 - (77%) Gaps:3/194 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FLAVATILTLYFVMTGKGERVSVGWFLASSNPYMWACLGIGLSVSLSVVGAALGIHTTGTSIVGG 81
            |.|...::.:.:.:...|.|..|.|||..::|:||:.|||||::||||||||.||:.||:||:||
Mouse    15 FWACMVVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGG 79

  Fly    82 GVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAG 146
            ||||||||||||:|:||||||||||:|.|||:|...|.||   |....||.:.|:.:||.:||||
Mouse    80 GVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS---ATEPKAIGHRNYHAGYSMFGAG 141

  Fly   147 LAVGLVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGIYMTSKSKMGD 210
            |.|||.|||||:.||||||||||:||.|.:|||||||||||||||||||:||.|..||:.||||
Mouse   142 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhaPPA1-1NP_001247111.1 ATP-synt_Vo_c_ATP6F_rpt1 51..113 CDD:349417 48/61 (79%)
ATP-synt_Vo_c_ATP6F_rpt2 138..202 CDD:349418 50/63 (79%)
Atp6v0bNP_291095.1 ATP-synt_Vo_c_ATP6F_rpt1 49..111 CDD:349417 48/61 (79%)
ATP-synt_Vo_c_ATP6F_rpt2 133..197 CDD:349418 50/63 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833677
Domainoid 1 1.000 100 1.000 Domainoid score I7023
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2986
Inparanoid 1 1.050 240 1.000 Inparanoid score I3340
Isobase 1 0.950 - 0 Normalized mean entropy S432
OMA 1 1.010 - - QHG53850
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002690
OrthoInspector 1 1.000 - - oto94028
orthoMCL 1 0.900 - - OOG6_102000
Panther 1 1.100 - - LDO PTHR10263
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1637
SonicParanoid 1 1.000 - - X2155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

Return to query results.
Submit another query.