DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment capt and cap1

DIOPT Version :9

Sequence 1:NP_001033870.1 Gene:capt / 45233 FlyBaseID:FBgn0261458 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_956203.1 Gene:cap1 / 334527 ZFINID:ZDB-GENE-030131-6459 Length:463 Species:Danio rerio


Alignment Length:500 Identity:252/500 - (50%)
Similarity:322/500 - (64%) Gaps:54/500 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 LESICERLETLVDRLERTLTAPQPIELPTPTLPPPPAEEEEALPVFEKAETPPPPPSPPSSNMSV 362
            |..:.:|||..|.|||         .:.:......||....|:.|:                  |
Zfish     4 LAGLVQRLEVAVGRLE---------SMSSSGSGGGPAAGSGAVGVY------------------V 41

  Fly   363 AGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLATQIAQPAQPKQAELLKPTS 427
            ..::.:::|||:||.|||.||||||.:|||::|.||.||.|.:..|:...:|:.|....||.|.|
Zfish    42 EAYDGLISGPLAQYFTLSQKIGGDVLKHAEMMKQAFTSQRQLLATASCSQKPSDPVLNALLAPVS 106

  Fly   428 TQISAIQDFREKHRSSPFFNHLSAISESIPALGWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKE 492
            ..|..:|.||||:|||||||||||:|||:||||||.:...||||||||.||..||||||||::||
Zfish   107 KAIQDVQAFREKNRSSPFFNHLSAVSESVPALGWVAMAPKPGPYVKEMQDAAMFYTNRVLKDYKE 171

  Fly   493 KDVTHVEWARAWVQTLTELQAYIRQYHTTGLVWSGKG---AAPAGGAPPPPPPGGLPPPPPMLDL 554
            ||.|||||..|:|...|||||||:|:|||||.||..|   ||..||||.|||||  |||||| ||
Zfish   172 KDKTHVEWVNAYVTIWTELQAYIKQHHTTGLSWSKTGPVAAAAGGGAPAPPPPG--PPPPPM-DL 233

  Fly   555 SALKLDSAGD----DRSALFAQINQGADITKGLKKVTGDMQTHKNPSLR-------TGPAPFKSP 608
            :.   .|.||    :|:||||.||:|:|||||||.|:.|.:|||||.||       :||.|| :|
Zfish   234 NK---SSGGDSEPTNRNALFASINKGSDITKGLKHVSDDQKTHKNPGLRGQTGPSVSGPKPF-TP 294

  Fly   609 AQSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVVYVFKCEGSTLTVKG 673
                  :..|..|.|::..||.|.|||||.:|.|:....|::.:.|:..|||.|||..|||.|||
Zfish   295 ------RPTATASPARSLPPVLELDGKKWKVENQEGAQNLVISDTELKQVVYGFKCNNSTLQVKG 353

  Fly   674 KVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQVLGSVPTVSIDKTDGCQMYLSKDSLGVEIV 738
            |:|:|..|:|||..|:||.||..||.:||:.|::||:|.|||:||:|||||.:|||||||..|||
Zfish   354 KINSITLDNCKKMGLVFDDVVGIVEVINCRDVKIQVIGKVPTISINKTDGCHVYLSKDSLSCEIV 418

  Fly   739 NSKSSEMNILLPDDSGDYTELALPEQYKTTIAGKTLKTVCVDSLG 783
            ::||||||:|:|:..|::||:.:|||:||...|..|.|...:..|
Zfish   419 SAKSSEMNVLVPNKDGEFTEIPVPEQFKTVWDGSKLVTTATEIAG 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
captNP_001033870.1 CAP_N 299..604 CDD:279545 161/318 (51%)
CAP_C 633..781 CDD:285769 80/147 (54%)
CARP 664..701 CDD:197827 21/36 (58%)
CARP 702..739 CDD:197827 24/36 (67%)
cap1NP_956203.1 CAP_N 5..285 CDD:279545 159/312 (51%)
CAP_C 312..461 CDD:285769 80/148 (54%)
CARP 344..381 CDD:197827 21/36 (58%)
CARP 382..419 CDD:197827 24/36 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592721
Domainoid 1 1.000 289 1.000 Domainoid score I1518
eggNOG 1 0.900 - - E1_KOG2675
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H74572
Inparanoid 1 1.050 467 1.000 Inparanoid score I1502
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1098760at2759
OrthoFinder 1 1.000 - - FOG0001959
OrthoInspector 1 1.000 - - otm25988
orthoMCL 1 0.900 - - OOG6_101374
Panther 1 1.100 - - O PTHR10652
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R167
SonicParanoid 1 1.000 - - X1462
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.790

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