DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment capt and cas-2

DIOPT Version :9

Sequence 1:NP_001033870.1 Gene:capt / 45233 FlyBaseID:FBgn0261458 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_491324.1 Gene:cas-2 / 266829 WormBaseID:WBGene00015975 Length:457 Species:Caenorhabditis elegans


Alignment Length:494 Identity:189/494 - (38%)
Similarity:266/494 - (53%) Gaps:61/494 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 SICERLETLVDRLERTLTAPQPIELPTPTLPPPPAEEEEALPVFEKAETPPPPPSPPSSNMSVAG 364
            |:..|||.:.:|.|..|.....                      .|.|| |...:|...|:    
 Worm     4 SVVSRLENVANRTENILLKYDS----------------------NKKET-PVDATPQIINL---- 41

  Fly   365 FEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLATQIAQPAQPKQAELLKPTSTQ 429
            ::|.:...|..:..||||||||:.:...:.:|.|.:...::.:|....:....:.|.|:...|.:
 Worm    42 YDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTHRYFLWIACGRKKADNDEFATLVNDLSKE 106

  Fly   430 ISAIQDFREKHRSSPFFNHLSAISESIPALGWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKD 494
            |.|..||:||:|.|.|:||:..:..::...|||...|||.|::|:..|...||.||:|.|.|.|:
 Worm   107 IVAFSDFKEKNRKSEFYNHICGLEAAVGGFGWVAEPKTPAPFIKDAIDTSVFYLNRILMEHKGKN 171

  Fly   495 VTHVEWARAWVQTLTELQAYIRQYHTTGLVW-SGKGAAP-----AGGAPPPPPPGGLPPPPPMLD 553
            ..|.|||::..:.:..|..|:||:||||||| |..||.|     :||||.|||    |||||:..
 Worm   172 DFHSEWAKSIKELMLSLHEYVRQHHTTGLVWNSDPGATPMCNRKSGGAPTPPP----PPPPPISL 232

  Fly   554 LSALKLDSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPFKSPAQSGG--SKA 616
            ::..|....|    ||...:|.|...|..|||||.:|||||||.||          :..|  ::.
 Worm   233 IAPSKPSGVG----ALLESLNTGLSATSRLKKVTPEMQTHKNPVLR----------EVNGQMNRK 283

  Fly   617 VAAPSAAQAKAP--VFER----DGKKWIIEYQKNNTGLLVENAEMNNVVYVFKCEGSTLTVKGKV 675
            ......::.|.|  :.|.    |||.|.:::|..|...:||..:....:|::||..|.:.:|||.
 Worm   284 TEERKVSENKKPEKIHESSIFWDGKIWKVDHQVGNKNAVVEVTDKKESIYIYKCNDSIIKIKGKA 348

  Fly   676 NNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQVLGSVPTVSIDKTDGCQMYLSKDSLGVEIVNS 740
            |.|..|.|:|.|::||.:||..|.:||||:|:|.||.:|||||.|||||.:|||:|:|..:||.|
 Worm   349 NAITLDGCRKTSVVFDGLVAQCEIINCQSIQIQTLGELPTVSIQKTDGCHIYLSRDALNAQIVAS 413

  Fly   741 KSSEMNI--LLPDDSGDYTELALPEQYKTTIAGKTLKTV 777
            |||||||  :|.|...:|||:|||||:.|.|.||.|.||
 Worm   414 KSSEMNISAMLEDGDDEYTEMALPEQFMTKIVGKKLVTV 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
captNP_001033870.1 CAP_N 299..604 CDD:279545 109/309 (35%)
CAP_C 633..781 CDD:285769 76/147 (52%)
CARP 664..701 CDD:197827 16/36 (44%)
CARP 702..739 CDD:197827 23/36 (64%)
cas-2NP_491324.1 CAP_N 4..274 CDD:279545 107/304 (35%)
CAP_C 305..456 CDD:285769 76/148 (51%)
CARP 337..374 CDD:197827 16/36 (44%)
CARP 375..411 CDD:197827 22/35 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165246
Domainoid 1 1.000 165 1.000 Domainoid score I2367
eggNOG 1 0.900 - - E1_KOG2675
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H74572
Inparanoid 1 1.050 321 1.000 Inparanoid score I1488
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1098760at2759
OrthoFinder 1 1.000 - - FOG0001959
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101374
Panther 1 1.100 - - O PTHR10652
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1462
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.800

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