DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment capt and cap2

DIOPT Version :9

Sequence 1:NP_001033870.1 Gene:capt / 45233 FlyBaseID:FBgn0261458 Length:783 Species:Drosophila melanogaster
Sequence 2:XP_002932726.1 Gene:cap2 / 100490411 XenbaseID:XB-GENE-982188 Length:483 Species:Xenopus tropicalis


Alignment Length:509 Identity:220/509 - (43%)
Similarity:304/509 - (59%) Gaps:52/509 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 LESICERLETLVDRLERTLTAPQPIELPTPTLPPPPAEEE-------EALPVFEKAETPPPPPSP 355
            ::.:.:|||..|.|||..|         :.:.....||..       ..:|..|           
 Frog     4 MDGLMDRLEKAVIRLESVL---------SNSFSSSSAENNVVNGINGGVVPFVE----------- 48

  Fly   356 PSSNMSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLATQIAQPAQPKQA 420
                    .|:.::||.|.:|:..|..|||||..||.:|::||.::..::..|:|..||.|.::.
 Frog    49 --------AFDALMAGALEEYVKNSKVIGGDVETHAGMVENAFKAERTFLVFASQHQQPPQAEEC 105

  Fly   421 ELLKPTSTQISAIQDFREKHRSSPFFNHLSAISESIPALGWVCVEKTPGPYVKEMNDAGQFYTNR 485
            .:|||.|.:|..||.||||:|.|..|||||.||||||||||:.:...||||||||.||..|||||
 Frog   106 LILKPISEKILEIQSFREKNRGSQLFNHLSGISESIPALGWIAMSPKPGPYVKEMTDAATFYTNR 170

  Fly   486 VLKEWKEKDVTHVEWARAWVQTLTELQAYIRQYHTTGLVW---------SGKGAA-----PAGGA 536
            |||::|..|..||:|.::::...:||||||::|||||:.|         :.||.|     .....
 Frog   171 VLKDYKSTDPRHVDWVKSYLNIWSELQAYIKEYHTTGVSWGNAICSVPSTAKGVALLQKSSESSC 235

  Fly   537 PPPPPPGGLPPPPPMLD-LSALKLDSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRT 600
            ||||||...|.||||.| |.:...|....||||||||:|||..|||||:.|:.:.:|||||.||:
 Frog   236 PPPPPPPPPPCPPPMADSLDSKAKDDISQDRSALFAQLNQGEAITKGLRHVSDEQKTHKNPKLRS 300

  Fly   601 GPAPFKSPAQSGGSKAVAAPSAA-QAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVVYVFKC 664
            ......||.:|.........|.. |:..|:.|.:||||.:|||:...||::...|:..|.|:|||
 Frog   301 QGGSSISPTKSHTPSPTTPQSPPHQSYPPLLELEGKKWRVEYQEGVQGLVISETELKQVAYIFKC 365

  Fly   665 EGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQVLGSVPTVSIDKTDGCQMYLS 729
            :.:|:.:|||:|:|:.|:|.|..|:||.||..||.:|.:.:::||||.|||:||:|||||.:|||
 Frog   366 KKTTIQIKGKLNSIIIDNCTKLGLVFDDVVGIVEVINSKDIEIQVLGKVPTISINKTDGCHVYLS 430

  Fly   730 KDSLGVEIVNSKSSEMNILLPDDSGDYTELALPEQYKTTIAGKTLKTVCVDSLG 783
            ::|:..|||::||||||||:|.| |||.|..:|||:||:..|..|.|...:.:|
 Frog   431 ENSIDCEIVSAKSSEMNILVPHD-GDYKEFPVPEQFKTSWDGSKLVTEPAEMMG 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
captNP_001033870.1 CAP_N 299..604 CDD:279545 137/326 (42%)
CAP_C 633..781 CDD:285769 75/147 (51%)
CARP 664..701 CDD:197827 17/36 (47%)
CARP 702..739 CDD:197827 20/36 (56%)
cap2XP_002932726.1 CAP_N 6..303 CDD:366517 137/324 (42%)
CAP_C 328..480 CDD:369992 77/152 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1098760at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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