DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn43Ab and Serpind1

DIOPT Version :10

Sequence 1:NP_001027395.1 Gene:Spn43Ab / 45040 FlyBaseID:FBgn0024293 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_077358.1 Gene:Serpind1 / 79224 RGDID:619854 Length:479 Species:Rattus norvegicus


Alignment Length:388 Identity:98/388 - (25%)
Similarity:177/388 - (45%) Gaps:43/388 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NLL----AADLYNAVAADHL--NENVVISPATIQSSMALAFVGAKGQTASELQQGLRLGPGDADA 88
            |:|    |.:||. |..|..  ::|:.|:|..|.::|.:..:|.:|:|..|:...|..    .|.
  Rat   107 NILNAKFAFNLYR-VLKDQATSSDNIFIAPVGISTAMGMISLGLRGETHEEVHSVLHF----KDF 166

  Fly    89 VSQRSGSYQQALTRDNNFR----------------LANNIYINENLEFKGSFRDVAQRQFDSNID 137
            |:  :.|..:..|..|.||                ..|::||.:....:..|:...:..:.:...
  Rat   167 VN--ASSKYEVTTIHNLFRKLTHRLFRRNFGYTLQSVNDLYIQKQFPIREDFKAAMREFYFAEAQ 229

  Fly   138 KLDFHPPYNKRTADGINRAVATKTNGKITDILRAELLNDRTEGVIVNGVSYSAAWQKAFRLDKTE 202
            :.||..|.....|   |..:...|.|.|.:.|  |..:..|:.:|:|.:.:..||...|.::.|.
  Rat   230 EADFSDPAFISKA---NSHILKLTKGLIKEAL--ENTDSATQMMILNCIYFKGAWMNKFPVEMTH 289

  Fly   203 KRSFRTGSGQSVKVDTMWTLQNFNYAEVNSLDAKVVELPYQNPDFSMLLLLPNRKDGLRSLQQSL 267
            ..:||....:.|||..|.|..||..|....||..:::|.|.. ..|||:::|.:..|:::|:..|
  Rat   290 NHNFRLNEREVVKVSMMQTKGNFLAANDQELDCDILQLEYVG-GISMLIVIPRKLSGMKTLEAQL 353

  Fly   268 SGKNLLAEIGAMSQQKVEVLLPKFSVTFGLGLEGPFKKLGVHTMFSRDGDFGNM--YRMFVSHFI 330
            :.:.:.....:|:.:..|||||||.:.....|....|.:|:..:|:::|:...:  .|:.:..| 
  Rat   354 TPQVVERWQKSMTNRTREVLLPKFKLEKNYNLVEVLKSMGITKLFNKNGNMSGISDQRIIIDLF- 417

  Fly   331 NAVEHKANVEVTEAGVDQPLETGLLKGLFSRSKKFEADHPFVFAI-KYKDS-IAFIGHIANYA 391
               :|::.:.|.|.|......|.:.....|...:|..|.||:|.: :::.| :.|:|.:||.|
  Rat   418 ---KHQSTITVNEEGTQAAAVTTVGFMPLSTQVRFTVDRPFLFLVYEHRTSCLLFMGRVANPA 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn43AbNP_001027395.1 serpin42Dd-like_insects 27..390 CDD:381070 96/385 (25%)
Serpind1NP_077358.1 serpinD1_HCF2 33..479 CDD:381004 98/388 (25%)
2 X 11 AA approximate repeats, Asp/Glu-rich (acidic) (hirudin-like) 55..79
Glycosaminoglycan-binding site. /evidence=ECO:0000250 172..192 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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