Protein Alignment Sox100B and HMGB3

DIOPT Version :10

• Sequence 1: NP_651839.1
• Gene: Sox100B / 45039
• FlyBaseID: FBgn0024288
• Length: 529
• Species: Drosophila melanogaster
• Sequence 2: NP_001031075.1
• Gene: HMGB3 / 838659
• AraportID: AT1G20696
• Length: 147
• Species: Arabidopsis thaliana
• Alignment Length: 136
• Identity: 34/136 - (25%)
• Similarity: 66/136 - (48%)
• Gaps: 19/136 - (13%)

  Fly    27 LKAEQKKAQGQGGRKEDERITTAVMKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAA 91
            :|..:.||:.:..:      .:...|..:|     .:.:||.|...     |||.:||.|:.:..
plant     1 MKGAKSKAETRSTK------LSVTKKPAKG-----AKGAAKDPNKP-----KRPSSAFFVFMEDF 49

  Fly    92 RRVMSKQYPHLQN-SELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDY--KYQPRRKKA 153
            |....:::|..:: :.:.|:.|:.||:|.||:|.|::..|:|.::.:::....|  |.....:|.
plant    50 RVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVIALRKM 114

  Fly   154 RVLPSQ 159
            |.|.||
plant   115 RNLTSQ 120

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox100B	NP_651839.1	HMG-box_SoxE	76..150	CDD:438840	21/76 (28%)
HMGB3	NP_001031075.1	HMG-box_AtHMGB1-like	36..96	CDD:438821	19/59 (32%)