DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox100B and 3xHMG-box2

DIOPT Version :10

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_194111.1 Gene:3xHMG-box2 / 828480 AraportID:AT4G23800 Length:456 Species:Arabidopsis thaliana


Alignment Length:58 Identity:16/58 - (27%)
Similarity:27/58 - (46%) Gaps:7/58 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 DKMLK---EIIDEVDADGSGELE----FEEFVTLAARFMVEEDAEAMQQELKEAFRLY 98
            :|.||   |:..|...:...:||    ||....|..:..:|.:.|..:|::.||..|:
plant    83 EKQLKRERELEREKQLEREKQLEREKQFEREKELERQKQLEREKELERQKIAEAEHLH 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 6/23 (26%)
3xHMG-box2NP_194111.1 PTZ00121 <2..454 CDD:173412 16/58 (28%)
HMG-box_AtHMGB6-like_rpt1 139..206 CDD:438822 1/2 (50%)
HMG-box_AtHMGB6-like_rpt2 255..320 CDD:438823
HMG-box_AtHMGB6-like_rpt3 371..447 CDD:438824
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.