DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and cic

DIOPT Version :10

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster


Alignment Length:680 Identity:135/680 - (19%)
Similarity:211/680 - (31%) Gaps:240/680 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NCSKDRAK---PVETLVLANYALKAEQKKAQGQ----------GGRKEDERITTAVM-------- 51
            |||.:.||   ......:||...|.:|::...|          .|...:.:..||.|        
  Fly  1112 NCSMNDAKVAAAAAAAAVANQRQKQQQEEPDDQLDDDVFETTTPGISANSKKQTAAMRLPTHNSN 1176

  Fly    52 --KVLEGYDWNLVQASAKAPTDRKKE----------------------------HIKRPMNAFMV 86
              |:.|.:|.....|.|.:...|:.:                            .|:|||||||:
  Fly  1177 IRKLEECHDDGAAGAPATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMI 1241

  Fly    87 WAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKY--QPR 149
            :::..|:::.|::|:..|..:||.||:.|..||...|..:.|.|..::..|.:.||::|:  :.|
  Fly  1242 FSKKHRKMVHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAHFKLHPEWKWCSKDR 1306

  Fly   150 RKKARVLPS---QQSGEGGSPGPEMTLSATMGSSGKPRS---SNSNGQRRAGKGNAAADL----- 203
            ||.:....:   :.||..|:...:..|.:..||......   |...|....|....::||     
  Fly  1307 RKSSTSTATPGGKASGAAGTGDAKQRLVSVDGSDSLEHDMCPSTPGGSGSCGGQGISSDLQGDII 1371

  Fly   204 --------GSC---ASTISHANVGSNSSDVFSNE------------------AFMKSLNSACAAS 239
                    .:|   .:|||..  |:.:..:..||                  ..:|.::..|...
  Fly  1372 PLTIDNYNSTCDEAPTTISMK--GNGNGKLMKNELPSDEDEQMLVVEEEQQQQTVKKIDLHCRER 1434

  Fly   240 LMEQSLIETGLD----------------------------------------------------- 251
            :.:..:.:|..|                                                     
  Fly  1435 VNDSDMDDTPFDYRKQQPEANQRSAEEHSTSGANGQAINAPPLSGGEREITLKPKAIKAHPVLES 1499

  Fly   252 --SPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEPVANAGDGYGVLLEAG--RE 312
              .|.:..|..:..|.|..|..|.|......|..         |.|::..|.| |...:||  :.
  Fly  1500 NMLPYTQMSIYTQYTSPKNPIGVTPFQPTGGAFK---------SMPISPKGSG-GKPEDAGSLQA 1554

  Fly   313 YVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLENINGYGGYTGSRVSYPAYSYPANGGHFATEEQ 377
            ::...::..:..|....:...|..:|                |..||.|    |.|.|       
  Fly  1555 HIKQEDIKQEPPSPYKLNNGSGSASG----------------GGVVSAP----PPNSG------- 1592

  Fly   378 QQQQALQASEALNYK-PAAADIDPKEIDQYFMDQMLPMTQHHHPHHTHPLHHPLHHSPPLNSSAS 441
                  ......|:. |.|..:..|              |.|     :|:||| |.||     ..
  Fly  1593 ------SVGAIFNFNVPTATALSQK--------------QFH-----YPMHHP-HRSP-----TD 1626

  Fly   442 LSSACSSASSQQPVAEYYEHLGYSPAASSASQNPNFGPQQPYANGAASMTPTLGDPAPQQELQSQ 506
            |.:|..:.....|..     :|...||:.|:. |...|.|....|.||.........|...||  
  Fly  1627 LRAAHQACVPSSPAG-----MGLGHAANIATP-PASAPAQIMGGGPASQKMFFAMTHPYTLLQ-- 1683

  Fly   507 QQEQQHQ--NPSQHHLW------GTYTYVN 528
               :.||  .||..||.      |.||..|
  Fly  1684 ---RSHQPGTPSLEHLQLDAFAPGGYTLRN 1710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 26/75 (35%)
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 27/76 (36%)
Blue background indicates that the domain is not in the aligned region.

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