DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and hmgb3

DIOPT Version :10

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_001004888.1 Gene:hmgb3 / 448228 XenbaseID:XB-GENE-1002014 Length:202 Species:Xenopus tropicalis


Alignment Length:152 Identity:37/152 - (24%)
Similarity:66/152 - (43%) Gaps:24/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 KAEQKKAQ-------GQGGRKEDERITTAVMKVLEGYDWNLVQASAKAPTDRKKEHI-------- 77
            :.|.||..       .:..:|..||..|...|....:| :|.:|. |...||:.:..        
 Frog    24 REEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFD-DLAKAD-KVRYDREMKDFGPVKKGKK 86

  Fly    78 -------KRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRM 135
                   |||.:.|.::....|..:....|.:...:::|.||::|.||.|.:|:|:...|.||:.
 Frog    87 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKE 151

  Fly   136 THKQEHPDYKYQPRRKKARVLP 157
            .::::..|||.:.:...|:..|
 Frog   152 KYEKDVADYKSKGKFDCAKGAP 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 21/88 (24%)
hmgb3NP_001004888.1 HMG-box_HMGB_rpt1 13..76 CDD:438794 14/53 (26%)
HMG-box_HMGB_rpt2 91..161 CDD:438795 19/69 (28%)

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