DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and sox17a

DIOPT Version :10

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_989425.1 Gene:sox17a / 395066 XenbaseID:XB-GENE-484295 Length:383 Species:Xenopus tropicalis


Alignment Length:444 Identity:114/444 - (25%)
Similarity:177/444 - (39%) Gaps:112/444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 AEQKKAQGQGGRKEDERITTAVMKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARR 93
            ||...:.|:|..|.|                    |.:.....:.:..|:||||||||||:..|:
 Frog    33 AEPMNSLGEGKLKSD--------------------AGSANSRGKAEARIRRPMNAFMVWAKDERK 77

  Fly    94 VMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKARVLPS 158
            .:::|.|.|.|:||||.|||.||.|..::|:||:|.||:||:.|.|:||:|||:|||:| :|...
 Frog    78 RLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK-QVKRM 141

  Fly   159 QQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANV--GSNSSD 221
            :::..|.....|...||.:|:.|:....:.:             ||....|..|:.:  ||:..:
 Frog   142 KRADTGFMHMAEPPESAVLGTDGRMCLESFS-------------LGYHEQTYPHSQLPQGSHYRE 193

  Fly   222 VFSNEAFMKSLNSACAASLMEQSLIETGLDSPCSTASS--MSSLTPPATPYNVAPSNAKASAA-- 282
                       ..|.|......|| .|...||...|.:  :...:||.....:.|.:..||..  
 Frog   194 -----------PQAMAPHYDGYSL-PTPESSPLDLAEADPVFFTSPPQDECQMMPYSYNASYTHQ 246

  Fly   283 --NNPSLLLRQLSEPVANAGDGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLE 345
              :..|:|:||:.                        :....||.:.|| |..|..:..:|    
 Frog   247 QNSGASMLVRQMP------------------------QAEQMGQGSPVQ-GMMGCQSSPQM---- 282

  Fly   346 NINGYGGYTGSRVSYPAYSYPANGGHFATEEQQQQQALQASEALNYKPAAADIDPKEIDQYF--- 407
                |.|......|...:..|..|.:....|.||   :..::.:......|::|..|.:||.   
 Frog   283 ----YYGQMYLPGSARHHQLPQAGQNSPPPEAQQ---MGRADHIQQVDMLAEVDRTEFEQYLSYV 340

  Fly   408 --MDQMLPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSASSQQPVAEYY 459
              .|    :..|:|...:         ..|...:..:||..|.||:    |.||
 Frog   341 AKSD----LGMHYHGQES---------VVPTADNGPISSVLSDAST----AVYY 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 42/73 (58%)
sox17aNP_989425.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 37..58 5/40 (13%)
HMG-box_SoxF_SOX17 55..135 CDD:438850 43/79 (54%)
Sox17_18_mid 191..239 CDD:463454 11/59 (19%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q9H6I2 331..339 3/7 (43%)
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:Q3KQ35 332..337 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.

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