DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and sox4b

DIOPT Version :9

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_957195.1 Gene:sox4b / 393875 ZFINID:ZDB-GENE-040426-1274 Length:342 Species:Danio rerio


Alignment Length:343 Identity:93/343 - (27%)
Similarity:148/343 - (43%) Gaps:106/343 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQE 140
            ||||||||||||:|..||.:.:|.|.:.|:|:||.|||.||.|||.||.||:..||:||:.|..:
Zfish    54 HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDGDKIPFIREAERLRLKHMAD 118

  Fly   141 HPDYKYQPRRKKARVLPSQQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGS 205
            :|||||:||:|        ....|..|..::::|       ||    |:.:|.|||.:...    
Zfish   119 YPDYKYRPRKK--------VKSSGSKPSEKLSIS-------KP----SSKKRSAGKPHKKE---- 160

  Fly   206 CASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQSLIETGLDSPCSTASSMSSLTPPATPY 270
                              ...|...||..|.||.:::||..:.......|::||.|....||:| 
Zfish   161 ------------------PGPADHHSLYKAKAAPVVKQSPEKKKRLYIFSSSSSPSPAAVPASP- 206

  Fly   271 NVAPSNAKASAANNPSLLLRQLSEPVANAGDGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGG 335
                  ..:|:|:.        |:|::        |.|                        :..
Zfish   207 ------TLSSSADT--------SDPLS--------LYE------------------------DAS 225

  Fly   336 GAGQEMDFLENINGYGGYTGSRVSYP------AYSYPANGGHFATEEQQQQQALQAS-----EAL 389
            |:|:|       :....||||.:..|      |:|..::....:::|:....||.|:     :::
Zfish   226 GSGKE-------DADTRYTGSSMRAPSPTPSAAHSSSSSQFSSSSDEEPDDDALDANTSPGFDSM 283

  Fly   390 NYKPAAADIDPKEIDQYF 407
            :.....:.:..::.|.:|
Zfish   284 SLGSIGSSVLDRDFDMHF 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 SOX-TCF_HMG-box 76..146 CDD:238684 41/69 (59%)
sox4bNP_957195.1 SOX-TCF_HMG-box 54..125 CDD:238684 42/70 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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