| Sequence 1: | NP_651839.1 | Gene: | Sox100B / 45039 | FlyBaseID: | FBgn0024288 | Length: | 529 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_002119.1 | Gene: | HMGB1 / 3146 | HGNCID: | 4983 | Length: | 215 | Species: | Homo sapiens |
| Alignment Length: | 182 | Identity: | 44/182 - (24%) |
|---|---|---|---|
| Similarity: | 80/182 - (43%) | Gaps: | 39/182 - (21%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 11 KDRAKPVETLVLANYAL-----KAEQKKAQ-------GQGGRKEDERITTAVMKVLEGYDWNLVQ 63
Fly 64 ASAKAPTDRK-KEHI----------------KRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSL 111
Fly 112 GKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDY--KYQPRRKKARVLPSQQS 161 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Sox100B | NP_651839.1 | HMG-box_SoxE | 76..150 | CDD:438840 | 23/91 (25%) |
| HMGB1 | NP_002119.1 | Sufficient for interaction with HAVCR2. /evidence=ECO:0000250|UniProtKB:P63158 | 1..97 | 19/96 (20%) | |
| LPS binding (delipidated). /evidence=ECO:0000269|PubMed:21660935 | 3..15 | 3/12 (25%) | |||
| HMG-box_HMGB_rpt1 | 8..76 | CDD:438794 | 17/75 (23%) | ||
| Nuclear localization signal (NLS) 1. /evidence=ECO:0000250|UniProtKB:P63159 | 27..43 | 2/15 (13%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 76..95 | 2/18 (11%) | |||
| LPS binding (Lipid A). /evidence=ECO:0000269|PubMed:21660935 | 80..96 | 0/15 (0%) | |||
| Cytokine-stimulating activity. /evidence=ECO:0000269|PubMed:12765338 | 89..108 | 5/18 (28%) | |||
| HMG-box_HMGB_rpt2 | 93..163 | CDD:438795 | 19/69 (28%) | ||
| Binding to AGER/RAGE. /evidence=ECO:0000250|UniProtKB:P63159 | 150..183 | 8/32 (25%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 161..215 | 6/21 (29%) | |||
| Nuclear localization signal (NLS) 2. /evidence=ECO:0000250|UniProtKB:P63159 | 178..184 | 1/4 (25%) |