DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and sox17

DIOPT Version :9

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_571362.2 Gene:sox17 / 30544 ZFINID:ZDB-GENE-991213-1 Length:413 Species:Danio rerio


Alignment Length:456 Identity:119/456 - (26%)
Similarity:173/456 - (37%) Gaps:145/456 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 QASAKAPTDRKKE-HIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPF 126
            :.||..|...|.| .|:||||||||||:..|:.:::|.|.|.|:||||.|||.||.|...||:||
Zfish    48 KCSAAGPGRGKSEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPF 112

  Fly   127 MEFAEKLRMTHKQEHPDYKYQPRRKK-----ARVLPSQQSGEGGSPG---PEMTL-----SATMG 178
            :|.||:||:.|.|:||:|||:|||:|     .|:.||..     .||   .:|||     ||...
Zfish   113 VEEAERLRVKHMQDHPNYKYRPRRRKQVKRNKRLEPSFP-----LPGMCDAKMTLCTEGMSAGYS 172

  Fly   179 SSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQ 243
            .:|.|:...::               :...:.|......:..|..:.|.|         |.|.:|
Zfish   173 GAGLPQYCENH---------------TLFESYSLPTPDPSPMDAGTTEFF---------AQLQDQ 213

  Fly   244 SLI------------ETGL--DSPC----STASSMSSLTPPATPYNVAPSNAKASAANNPSLLLR 290
            |..            :|.:  |:.|    .|..|..|       :::|.||...:..:|      
Zfish   214 SAFSYHHQQEHHFQEQTNILNDTHCHGNTQTLKSRQS-------HSIAYSNINTNTNSN------ 265

  Fly   291 QLSEPVANAGDGYGVLLEAGREYVAIGEVNYQ---GQSAGVQSGAEGGGAGQEMDFLENINGYGG 352
             |..|: ||               .:..:|.|   .::|..|.....|      ..|...|....
Zfish   266 -LHAPI-NA---------------QLSSINLQQVFHENANPQISHHPG------THLNIFNRSPS 307

  Fly   353 YTGSRVSYPAY--------------SYPANGGHFATEEQQQQQALQASEALNYKPAAADIDPKEI 403
            .:......|||              |......|..:....:||::  :||.:....|.....:.:
Zfish   308 SSSHHAMTPAYLNCPSTLDTFYNSSSQMKELSHCVSSHTHKQQSI--AEAQSQASTATHSSGQMV 370

  Fly   404 DQYFMDQML----PMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSASSQQPVAEYYEHLGY 464
            |:...:..|    |                   |.||..|..:|:..|.|||    |.||  .||
Zfish   371 DEVEFEHCLSFGVP-------------------SAPLPGSDLISTVLSDASS----AVYY--CGY 410

  Fly   465 S 465
            :
Zfish   411 N 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 SOX-TCF_HMG-box 76..146 CDD:238684 40/69 (58%)
sox17NP_571362.2 SOX-TCF_HMG-box 62..133 CDD:238684 41/70 (59%)
Sox_C_TAD 186..411 CDD:288887 55/296 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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