Protein Alignment Sox100B and hmg-1.2

DIOPT Version :10

• Sequence 1: NP_651839.1
• Gene: Sox100B / 45039
• FlyBaseID: FBgn0024288
• Length: 529
• Species: Drosophila melanogaster
• Sequence 2: NP_001380090.1
• Gene: hmg-1.2 / 175890
• WormBaseID: WBGene00001972
• Length: 235
• Species: Caenorhabditis elegans
• Alignment Length: 199
• Identity: 42/199 - (21%)
• Similarity: 72/199 - (36%)
• Gaps: 41/199 - (20%)

  Fly    56 GYDWNLVQASAK--------------------APTDRKKEHIKRPMNAFMVWAQAARRVMSKQYP 100
            ||..|:..:|:.                    .|.|..|..::...:.:..:.:.......|:||
 Worm     4 GYSANIFPSSSSPTLYQSHQLQPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYP 68

  Fly   101 --HLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKY-----QPRRKKARVLPS 158
              ::|.:|:||...:.||.:.|.:|:.|.|.|:|....::.|.....|     ..:||:|:..|.
 Worm    69 NENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPH 133

  Fly   159 QQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVF 223
                     .|:..|||....|...|.....|......|..|.:||.....     |...:.|::
 Worm   134 ---------APKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKL-----VPQETKDMY 184

  Fly   224 SNEA 227
            ..:|
 Worm   185 EQKA 188

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox100B	NP_651839.1	HMG-box_SoxE	76..150	CDD:438840	17/80 (21%)
hmg-1.2	NP_001380090.1	HMG-box_HMGB_rpt1	44..112	CDD:438794	16/67 (24%)
		HMG-box_SF	124..202	CDD:469606	18/79 (23%)