DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and sox17b.2

DIOPT Version :10

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_001090837.1 Gene:sox17b.2 / 100038235 XenbaseID:XB-GENE-495335 Length:351 Species:Xenopus tropicalis


Alignment Length:442 Identity:114/442 - (25%)
Similarity:169/442 - (38%) Gaps:131/442 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YDW-----------NLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKS 110
            |:|           ...:|.:.....:.:..|:||||||||||:..|:.:::|.|.|.|:||||.
 Frog     5 YEWTDPLTMFQDAKTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKM 69

  Fly   111 LGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKARVLPSQQSG---EGGSPGPE-M 171
            |||.||:|..:.|:||::.||:||:.|.|::|||||:|||||.  :..::.|   ....|||: |
 Frog    70 LGKSWKSLTLASKRPFVKEAERLRVQHIQDYPDYKYRPRRKKQ--VKREEEGFLPSADIPGPQVM 132

  Fly   172 TLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSAC 236
            ..:|.:|.:.|.:.|..|.|:                                            
 Frog   133 GCNAMVGQNYKMQYSGQNSQQ-------------------------------------------- 153

  Fly   237 AASLMEQSLIETGLDSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEPVANAGD 301
                                    |.:||.....:..|........|.|...:.|.|       .
 Frog   154 ------------------------SQITPAGYFEDHNPVGFYYRGYNVPKYYMSQNS-------S 187

  Fly   302 GYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLENI---NGYGGYTGSRVSYPAY 363
            ||......| ||.|: ..|:.......|..|.....|::|...|||   :...|..|.:||...|
 Frog   188 GYCSPPTQG-EYQAL-SYNFNSSYIPYQQNASAPAMGKQMAVKENIIQESPEHGIMGCQVSPQMY 250

  Fly   364 SYPANGGHFATE--------EQQQQQALQASEAL---NYKPA------AADIDPKEIDQYFMDQM 411
                ||..:..|        :.:|..:|..|:.:   ||.|:      .:|||..|.|||.|   
 Frog   251 ----NGQMYVPECAKTHPVAQTEQHSSLHQSQQMVTQNYLPSQQDGHLESDIDKTEFDQYLM--- 308

  Fly   412 LPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSASSQQPVAEYYEHLG 463
                  :.|.....|.:.:.......|:..|.|..|.|:|    ..||::.|
 Frog   309 ------YEPKSDTELIYTIDQDSGAYSTNLLPSLISEANS----VCYYDYCG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 41/73 (56%)
sox17b.2NP_001090837.1 HMG-box_SoxF_SOX17 30..110 CDD:438850 42/79 (53%)

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