DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox100B and sox17b.2

DIOPT Version :9

Sequence 1:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster
Sequence 2:NP_001090837.1 Gene:sox17b.2 / 100038235 XenbaseID:XB-GENE-495335 Length:351 Species:Xenopus tropicalis


Alignment Length:442 Identity:114/442 - (25%)
Similarity:169/442 - (38%) Gaps:131/442 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YDW-----------NLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVMSKQYPHLQNSELSKS 110
            |:|           ...:|.:.....:.:..|:||||||||||:..|:.:::|.|.|.|:||||.
 Frog     5 YEWTDPLTMFQDAKTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKM 69

  Fly   111 LGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKARVLPSQQSG---EGGSPGPE-M 171
            |||.||:|..:.|:||::.||:||:.|.|::|||||:|||||.  :..::.|   ....|||: |
 Frog    70 LGKSWKSLTLASKRPFVKEAERLRVQHIQDYPDYKYRPRRKKQ--VKREEEGFLPSADIPGPQVM 132

  Fly   172 TLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSAC 236
            ..:|.:|.:.|.:.|..|.|:                                            
 Frog   133 GCNAMVGQNYKMQYSGQNSQQ-------------------------------------------- 153

  Fly   237 AASLMEQSLIETGLDSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEPVANAGD 301
                                    |.:||.....:..|........|.|...:.|.|       .
 Frog   154 ------------------------SQITPAGYFEDHNPVGFYYRGYNVPKYYMSQNS-------S 187

  Fly   302 GYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLENI---NGYGGYTGSRVSYPAY 363
            ||......| ||.|: ..|:.......|..|.....|::|...|||   :...|..|.:||...|
 Frog   188 GYCSPPTQG-EYQAL-SYNFNSSYIPYQQNASAPAMGKQMAVKENIIQESPEHGIMGCQVSPQMY 250

  Fly   364 SYPANGGHFATE--------EQQQQQALQASEAL---NYKPA------AADIDPKEIDQYFMDQM 411
                ||..:..|        :.:|..:|..|:.:   ||.|:      .:|||..|.|||.|   
 Frog   251 ----NGQMYVPECAKTHPVAQTEQHSSLHQSQQMVTQNYLPSQQDGHLESDIDKTEFDQYLM--- 308

  Fly   412 LPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSASSQQPVAEYYEHLG 463
                  :.|.....|.:.:.......|:..|.|..|.|:|    ..||::.|
 Frog   309 ------YEPKSDTELIYTIDQDSGAYSTNLLPSLISEANS----VCYYDYCG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox100BNP_651839.1 SOX-TCF_HMG-box 76..146 CDD:238684 38/69 (55%)
sox17b.2NP_001090837.1 SOX-TCF_HMG-box 35..106 CDD:238684 39/70 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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