DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha68-2 and Vha68-1

DIOPT Version :9

Sequence 1:NP_001246015.1 Gene:Vha68-2 / 45012 FlyBaseID:FBgn0263598 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_001260426.1 Gene:Vha68-1 / 45668 FlyBaseID:FBgn0265262 Length:614 Species:Drosophila melanogaster


Alignment Length:614 Identity:564/614 - (91%)
Similarity:593/614 - (96%) Gaps:0/614 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNLKRFDDEERESKYGRVFAVSGPVVTAEAMSGSAMYELVRVGYYELVGEIIRLEGDMATIQVY 65
            ||||::|.||||||:||||:|||||||||||||||||||||||||||||||||||||||||||||
  Fly     1 MSNLRKFKDEERESEYGRVYAVSGPVVTAEAMSGSAMYELVRVGYYELVGEIIRLEGDMATIQVY 65

  Fly    66 EETSGVTVGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDINELTESIYIPKGVNVPSLSRVAS 130
            |||||||||||||||||||||||||||||||||||||||:||..:|.|||||||||..:|||...
  Fly    66 EETSGVTVGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLRDIGVMTNSIYIPKGVNTTALSRSEM 130

  Fly   131 WEFNPLNVKVGSHITGGDLYGLVHENTLVKHKMIVNPRAKGTVRYIAPSGNYKVDDVVLETEFDG 195
            ||||||||:||||||||||||:||||||||.:|||.||||||||||||:|||.::|:||||||||
  Fly   131 WEFNPLNVRVGSHITGGDLYGVVHENTLVKQRMIVAPRAKGTVRYIAPAGNYNLEDIVLETEFDG 195

  Fly   196 EITKHTMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL 260
            |||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
  Fly   196 EITKHTMLQVWPVRQPRPVTEKLPANHPLFTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL 260

  Fly   261 SKYSNSDVIIYVGCGERGNEMSEVLRDFPELSVEIDGVTESIMKRTALVANTSNMPVAAREASIY 325
            |||||||||||||||||||||||||||||||:.||||||||||||||||||||||||||||||||
  Fly   261 SKYSNSDVIIYVGCGERGNEMSEVLRDFPELTCEIDGVTESIMKRTALVANTSNMPVAAREASIY 325

  Fly   326 TGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK 390
            ||||||||||||||||:||||||||||||||||||||||||||||||||||||||:|||||||||
  Fly   326 TGITLSEYFRDMGYNVAMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLATFYERAGRVK 390

  Fly   391 CLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM 455
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   391 CLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYM 455

  Fly   456 RALDDFYDKNFPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQN 520
            ||||::||||:|||||||||||||||||||||||||||||||||||||:||||||||||||||||
  Fly   456 RALDEYYDKNYPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKVTLEVAKLLKDDFLQQN 520

  Fly   521 SYSSYDRFCPFYKTVGMLRNIIDFYDMARHSVESTAQSENKITWNVIREAMGNIMYQLSSMKFKD 585
            |||.|||.|||||||||||||:.||:.|||:|||||||:||||||.|||:||.||||||||||||
  Fly   521 SYSPYDRVCPFYKTVGMLRNIMAFYETARHAVESTAQSDNKITWNTIRESMGGIMYQLSSMKFKD 585

  Fly   586 PVKDGEAKIKADFEQLHEDLQQAFRNLED 614
            ||||||.|||||::||:||||||||||||
  Fly   586 PVKDGEQKIKADYDQLYEDLQQAFRNLED 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha68-2NP_001246015.1 V-ATPase_V1_A 16..606 CDD:273411 543/589 (92%)
Vha68-1NP_001260426.1 V-ATPase_V1_A 15..606 CDD:273411 543/590 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449904
Domainoid 1 1.000 404 1.000 Domainoid score I135
eggNOG 1 0.900 - - E1_COG1155
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 848 1.000 Inparanoid score I68
Isobase 1 0.950 - 0 Normalized mean entropy S546
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D160349at33208
OrthoFinder 1 1.000 - - FOG0001869
OrthoInspector 1 1.000 - - mtm6576
orthoMCL 1 0.900 - - OOG6_100902
Panther 1 1.100 - - P PTHR43607
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1565
1211.750

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