DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsx1 and lbe

DIOPT Version :10

Sequence 1:NP_001012251.1 Gene:gsx1 / 449875 ZFINID:ZDB-GENE-041008-135 Length:243 Species:Danio rerio
Sequence 2:NP_524435.2 Gene:lbe / 42542 FlyBaseID:FBgn0011278 Length:479 Species:Drosophila melanogaster


Alignment Length:119 Identity:43/119 - (36%)
Similarity:60/119 - (50%) Gaps:9/119 - (7%)


- Green bases have known domain annotations that are detailed below.


Zfish    82 GTQYCHSALSRQHSTSSGVNLNSG----SGLYQAAYPVPDPRQ--FHCISIENSSSQLQSSKRMR 140
            |::......|.:..|.||  .::|    ..|:|......|..|  .| :.|.::..|.:..::.|
  Fly   296 GSEEAQKKKSEEQPTGSG--KSNGDTPLDALFQMTTKDFDESQDKSH-LDIFSNRPQPKKKRKSR 357

Zfish   141 TAFTSTQLLELEREFTSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 194
            ||||:.|:.|||:.|....|||...|.|||..|.||..||..||||||.|.|::
  Fly   358 TAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITWFQNRRAKQKRD 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsx1NP_001012251.1 Homeodomain 137..193 CDD:459649 29/55 (53%)
lbeNP_524435.2 Homeodomain 354..410 CDD:459649 29/55 (53%)

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