DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn3 and actn1

DIOPT Version :10

Sequence 1:NP_524801.1 Gene:Actn3 / 44964 FlyBaseID:FBgn0015008 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_012824128.1 Gene:actn1 / 780123 XenbaseID:XB-GENE-493909 Length:912 Species:Xenopus tropicalis


Alignment Length:93 Identity:30/93 - (32%)
Similarity:45/93 - (48%) Gaps:2/93 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 LLRWCQERVKPY-GIPMYEFSASWISGRALCAIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVA-K 511
            ||.|||.:..|| .:.:..|..||..|...||:||.:.|:|||...|.|..|...|.....|| :
 Frog   148 LLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAER 212

  Fly   512 SIGVSDSVDLIRELRQGRPNLEKIVDFV 539
            .:.:...:|....:...||:.:.|:.:|
 Frog   213 YLDIPKMLDAEDIVGTARPDEKAIMTYV 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Actn3NP_524801.1 SMC_N <13..277 CDD:481474
CH_SF 443..540 CDD:469584 30/93 (32%)
actn1XP_012824128.1 CH_ACTN_rpt1 26..130 CDD:409063
CH_ACTN_rpt2 134..248 CDD:409065 30/93 (32%)
Spectrin 272..382 CDD:395348
SPEC 393..620 CDD:238103
Spectrin 632..731 CDD:395348
PTZ00184 738..>869 CDD:185504
EFhand_Ca_insen 842..908 CDD:430177
Blue background indicates that the domain is not in the aligned region.

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