DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn3 and smtnb

DIOPT Version :10

Sequence 1:NP_524801.1 Gene:Actn3 / 44964 FlyBaseID:FBgn0015008 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_021332366.1 Gene:smtnb / 664685 ZFINID:ZDB-GENE-070912-2 Length:910 Species:Danio rerio


Alignment Length:518 Identity:99/518 - (19%)
Similarity:191/518 - (36%) Gaps:153/518 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 RFPYQESSCTTTETLVKESP------ICELNKLRLMLK-------------NEKKKQELE---IM 136
            |.|...||.:::.|.|..||      ..:..:|.|.|:             ....|.|.|   ::
Zfish   465 RNPPSHSSLSSSSTAVNMSPRIITAAAPQRTELTLGLRATPFKVTSSSLSSGSSVKMETEPVSLV 529

  Fly   137 GHNLIIMKEKTLVL------QARKNQRAAENRLAEKQDRI-------KALEECLANCKFQLKNVN 188
            |.::|.......||      .:.|.:..:|...:||...|       |.|:||        |:..
Zfish   530 GESVIETSHDVPVLPNGSSMTSIKTEAQSEKLTSEKLRDIEDEEILDKMLDEC--------KDFE 586

  Fly   189 EQYQKLKKASNQLIRES-NQIRPQKSWSVLVGRRKGRISTRTSFVWKSLKLDQSERETLMGLKKR 252
            |:         ::||.: .::|.:|        |:.::.....      ::||.|:|        
Zfish   587 ER---------KMIRTAMRELRKKK--------REAKLGCTQE------EMDQREKE-------- 620

  Fly   253 LSEEKEIKLRAKTEMSKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSALSQYNTL 317
             .:::.::||.:.| .:.:||.....|.|         |:|..|...|:..|.         |.:
Zfish   621 -RDQRLLELRQQRE-DRCKKADGSNVLIK---------KTERSADSSTVSHIT---------NRI 665

  Fly   318 KFPDCNFQLSR--LMKSLYGSLTTIRDRWIRKISSAVEPTPSCLKSNTPSLPEPPLTVSFSTDLF 380
            ...|...:.||  :|:|.|          |:|.......|.|...|:|.|.              
Zfish   666 SHTDDAGRTSRSTIMESSY----------IQKTDKGTTQTKSYSYSSTTST-------------- 706

  Fly   381 WDKIYKPCTQSNPVMPNTSLIPVLPKKQPKSLQLTCEPSVQYKVASRSSTTAPVPKYLGKTFGDR 445
             .|:.....:.:....::|....|.::|.:..:|....::. |.::..:..|.:.| |..|.|:.
Zfish   707 -RKVGSVFDREDNTSRSSSRSSALDRRQAERSELMRAQTLP-KTSAAQARKAMIEK-LENTSGNL 768

  Fly   446 RLS----------------------LLRWCQERVKPY-GIPMYEFSASWISGRALCAIIHSYLPD 487
            .::                      ||.||:.:.:.| .:.:..||:||..|.|.||::|::.|:
Zfish   769 AIAQVNRVQRSTSFGVPNANSIKQMLLDWCRSKTRSYENVDIQNFSSSWSDGMAFCALVHNFFPE 833

  Fly   488 LIDKTYLA----KKKPEEVLAYGIKVAKSIGVSDSVDLIRELRQGRPNLEKIVDFVEELQGYL 546
            ..|.:.|:    ::..|...:.....|..:.:.:..|::  :...:|:.:.:..:|:.|..:|
Zfish   834 AFDYSSLSPTNRRQNFETAFSTAEAYANCMPLLEVEDMM--IMGKKPDSKCVFTYVQSLVNHL 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Actn3NP_524801.1 SMC_N <13..277 CDD:481474 43/218 (20%)
CH_SF 443..540 CDD:469584 22/123 (18%)
smtnbXP_021332366.1 Smoothelin <10..39 CDD:463614
Smoothelin 73..120 CDD:463614
Smoothelin 553..602 CDD:463614 14/65 (22%)
CH_SF 789..899 CDD:469584 24/108 (22%)
Blue background indicates that the domain is not in the aligned region.

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