DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn3 and specc1la

DIOPT Version :10

Sequence 1:NP_524801.1 Gene:Actn3 / 44964 FlyBaseID:FBgn0015008 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001034905.1 Gene:specc1la / 561775 ZFINID:ZDB-GENE-060810-139 Length:1132 Species:Danio rerio


Alignment Length:654 Identity:139/654 - (21%)
Similarity:237/654 - (36%) Gaps:200/654 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 QEQSSKALVLLRCTRYIK----RLSMVLTLLETEE----GLNKVNKTLFQLDVDTILFELECIVK 84
            ||::|.|.||..|...:.    .||....|||.|.    .|..::....:.|:..:|        
Zfish   544 QERASMAAVLEECKAAVNNDQAELSRCRVLLEQERQKVAELYSIHNAGDKSDIHQLL-------- 600

  Fly    85 EALKSLSVSRFPYQESSCTTTETLVKESPICELNKLR----------LMLKNEKKKQELEIMGHN 139
            |.::                   |.||....:.:||:          ..|::...|.:.|.....
Zfish   601 EGVR-------------------LDKEEAEAKASKLQDDLGHARSEVACLQDTLNKLDAEYRDFQ 646

  Fly   140 LIIMKEKTLVLQARKNQRAAENRLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRE 204
            .::.||  |..|.|..::..|: |.||:..|..::|.:    |:|::..||::.:|...|.:|.:
Zfish   647 SVVQKE--LAEQKRAIEKQRED-LQEKETEIGDMKETI----FELEDEVEQHRAVKLHDNLIISD 704

  Fly   205 ----SNQIRPQK---SWSVLVGRRKGRISTRTSFVWKSLKLD-----------QSERETLMG-LK 250
                ..:::.||   ...:.:..|:.|   ..|..|:..:.|           :||.:..:| |:
Zfish   705 LENSMKKLQDQKHDMEREIKILHRRLR---EESAEWRQFQADLQTAVVIANDIKSEAQEEIGDLR 766

  Fly   251 KRLSE--EKEIKLRAKTEMSKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSALSQ 313
            :||.|  ||..||..:.|..|.||..:|    :|.: :...|..|.|            |:||.|
Zfish   767 RRLQEAQEKNEKLGKEIEEVKNRKQDEE----RGRV-YNYMNAVERD------------LAALRQ 814

  Fly   314 YNTL-KFPDCNFQLSRLMKSLYGSL-----------TTIRDRWIRKISSAVEPTPSCLKSNTPS- 365
            ...| :.|..:.:.|..:|:|..|.           |.:    ....::|.......:.|.||: 
Zfish   815 GMGLSRRPSTSSEPSPTVKTLIKSFDSASQGPGANATAV----AAAAAAAAAAAAVTVTSTTPTA 875

  Fly   366 -LPEPPLTVS-FSTDLFWDKIYKPCTQSNPV-----------------------------MPNTS 399
             ||..||:.| ..|        .|....:|:                             ||...
Zfish   876 PLPRTPLSPSPMKT--------PPAAAVSPIQRHSITGSMAAAKPLSSLADKRPSYTDISMPAEH 932

  Fly   400 LIPVLPKKQPKSLQLTC----------------EP------------------SVQYKVASRSST 430
            |:.....:...:||...                ||                  |....::|.||.
Zfish   933 LLRAANSRPASALQRVSNMDTSKTITVSRRSSEEPKRDISTPDGGPASSLISMSSAAALSSSSSP 997

  Fly   431 TA----------------PVPKYLGKTFGDRRLSLLRWCQERVKPY-GIPMYEFSASWISGRALC 478
            ||                |:.....:..|.:|.:||||||::.:.| .|.:..||:||..|.|.|
Zfish   998 TASVNPTARSRLREERKDPLSALAREYGGSKRNALLRWCQKKTEGYQNIDITNFSSSWNDGLAFC 1062

  Fly   479 AIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVAKSIGVSDSVDLIRELRQGRPNLEKIVDFVEELQ 543
            |::|:|||..|....|..:..........:.|:|:|:..::|:...:...||:.:.::.:|..:.
Zfish  1063 AVLHTYLPAHIPYQELNSQDKRRNFTLAFQAAESVGIKSTLDINDMVHTERPDWQSVMTYVTSIY 1127

  Fly   544 GYLD 547
            .|.:
Zfish  1128 KYFE 1131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Actn3NP_524801.1 SMC_N <13..277 CDD:481474 65/287 (23%)
CH_SF 443..540 CDD:469584 30/97 (31%)
specc1laNP_001034905.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..166
MSCRAMM_ClfA 20..>165 CDD:468110
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..381
PRK03918 <381..>816 CDD:235175 74/325 (23%)
DUF5585 821..>960 CDD:465521 23/150 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 869..895 10/33 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 939..1016 10/76 (13%)
CH_CYTS 1020..1131 CDD:409048 32/110 (29%)
Blue background indicates that the domain is not in the aligned region.

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