DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn3 and Smtn

DIOPT Version :10

Sequence 1:NP_524801.1 Gene:Actn3 / 44964 FlyBaseID:FBgn0015008 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_006514787.1 Gene:Smtn / 29856 MGIID:1354727 Length:954 Species:Mus musculus


Alignment Length:421 Identity:85/421 - (20%)
Similarity:153/421 - (36%) Gaps:105/421 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 MKEKTLVLQARKNQRAA--ENRLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRES 205
            |.::|...:.||..|||  |.|..::..|.|                 |:.::|::|        
Mouse   624 MLDQTTNFEERKLIRAALRELRQRKRDQRDK-----------------ERERRLREA-------- 663

  Fly   206 NQIRPQKSWSVLVGRRKGRISTRTSFVWKSLKLDQSERETLMGLKKRLSEEKEIKLRAKT---EM 267
             :.||        |..:..::|.|:........|.|...|:. ..:||....:....|:|   |.
Mouse   664 -RARP--------GESRSNVATETTTRHSQRAADGSTVGTVT-KTERLVHSNDGTQTARTTTVES 718

  Fly   268 SKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSALSQYNTLKFPDCNFQLSRLMKS 332
            |.:|:               |:|.| :.:|..|..|..|:.|:.|..::.|.....|.......|
Mouse   719 SFMRR---------------LENGS-SSSSTTTTTVQTKSFSSSSSSSSSKKMGSIFDREDQTSS 767

  Fly   333 LYGSLTTIRDRWIRKISSAVEPTPSCLKSNTPSLPEPPLTVSFSTDLFWDKIYKPCTQSNPVMPN 397
            ..|||..:..|...|....::         ..|||:  .:.|.:.....:|:.|..:...|..|.
Mouse   768 RPGSLAALERRQAEKKKELMK---------AQSLPK--TSASQARKAMIEKLEKEGSAGGPGTPR 821

  Fly   398 TSLIPVLPKKQPKSLQLTCEPSVQYKVASRSSTTAPVPKYLGKTFGDRRLSLLRWCQERVKPY-G 461
            |                          |.:.||:..||     .....:..||.||:.:.:.| .
Mouse   822 T--------------------------AVQRSTSFGVP-----NANSIKQMLLDWCRAKTRGYEH 855

  Fly   462 IPMYEFSASWISGRALCAIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVAKSIGVSDSVDLIR--- 523
            :.:..||:||..|.|.||::|::.|:..|...|:.:...:........|:.:  .|.|.|:.   
Mouse   856 VDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEML--VDCVPLVEVED 918

  Fly   524 -ELRQGRPNLEKIVDFVEELQGYLDMYDTNI 553
             .:...:|:.:.:..:|:.|..:|..::..:
Mouse   919 MMIMGKKPDPKCVFTYVQSLYNHLRRHELRL 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Actn3NP_524801.1 SMC_N <13..277 CDD:481474 29/138 (21%)
CH_SF 443..540 CDD:469584 22/101 (22%)
SmtnXP_006514787.1 Smoothelin 1..34 CDD:463614
Smoothelin 73..122 CDD:463614
PHA03247 <107..454 CDD:223021
Smoothelin 601..648 CDD:463614 9/23 (39%)
CH_SMTNA 837..947 CDD:409107 25/111 (23%)
Blue background indicates that the domain is not in the aligned region.

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