DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-alpha60 and pri-2

DIOPT Version :9

Sequence 1:NP_652001.2 Gene:DNApol-alpha60 / 44915 FlyBaseID:FBgn0259676 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001251922.1 Gene:pri-2 / 173122 WormBaseID:WBGene00004181 Length:503 Species:Caenorhabditis elegans


Alignment Length:510 Identity:161/510 - (31%)
Similarity:265/510 - (51%) Gaps:66/510 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRARHEVKVEVASLET------KYPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRN 65
            :..|.::.....|::|      :.|..:.||..||.:|:.:.||:::|:|||:||:     |..|
 Worm    14 RNVRTKISSNRQSIKTAPTKAAEIPEYLQLYQTPPGDDISLTEFDDIAMERLKLLK-----SFEN 73

  Fly    66 LR----VLSDEWKEIVSADLTREGLRSYLRLCS-------TGGSAKHEADI-QTRRRDYLSHFIL 118
            |:    :.:||:|:            .:.:||.       ......|:.:: :..|||.:.||||
 Worm    74 LKDSVSLYNDEFKD------------KFRKLCDGTKLIVFPDQKPPHQEEVYELWRRDNIGHFIL 126

  Fly   119 RLAYCRSEDLARWFVAREMELFRYKFAALSSFEVKQFLE---AN-GFEIHPLTEAQKDEVKDGLY 179
            |||:||:.:..:|....|.:..|::...    |.:|.|:   || .|.|..|...:|..:.:.| 
 Worm   127 RLAFCRTPENQKWLTQIEGDFLRFRLRQ----EREQVLDSALANVNFTIEKLGYTEKQAMIEDL- 186

  Fly   180 ESTVGQSVAKIELLD-----FYKVPFTQVLDLVRGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIE 239
                 ::..:..|.:     ||||.|...::|:|.....||.|:||....|||:::.||.::.:.
 Worm   187 -----EAACQFNLFEAPNKTFYKVDFIDAIELIRRGSVHLKKGFAYFPFDDLVTILVTKMKNNMM 246

  Fly   240 QGLQAAKTMVEDVEADERISRTLKAL-HNSYTGRDYTVCR-DAAVPI--ESLDQLSKTSMPLCMR 300
            ..:..:...:..:|.:.|:...|..| :|:|:|:||...: |.::.:  ..:|:||:.|...||:
 Worm   247 AAMARSFKHLAILEEEGRLLPRLSLLSNNAYSGKDYNGEQPDGSIIVTRHMIDKLSRRSFAPCMK 311

  Fly   301 MCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMDADKFTRSYEYNIYHNYGK 365
            ..|.|:|.|||:|:..|.||||||||||::|::::...|:|||||:.:|||.:.|.|||.:.|||
 Worm   312 QMHNHLRVNHHLKYGARRQYGLFLKGIGLSLDEAIAMMRDEFTKKITSDKFDKEYGYNIRYMYGK 376

  Fly   366 KGSMVNYTPYSCAKII-KDVAGPGDCHGCPYKNMDQGSLKTKLSSYG-LSASAIDEVMFFVSRGH 428
            :|..|..|..|||.|| ::.....||||||:::.::..||.||.|.. |....|:.:........
 Worm   377 EGRRVAQTAMSCATIILRNPPSAVDCHGCPFRHSEKQVLKQKLGSDAILKKEQIERIAELAELNQ 441

  Fly   429 YQIGCGKYFQLTHN---SPVEPSINHPNNYFEESQIAMGNR--QKRANGSAP-PK 477
            |...|.:||:..||   ..:...|.|||.::||||..:..|  .|:.:..|| ||
 Worm   442 YDKACTRYFEFMHNLEEGGLGQLITHPNQFYEESQKIVAERIAAKQESQEAPAPK 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-alpha60NP_652001.2 PriL_PriS_Eukaryotic 30..459 CDD:143474 148/458 (32%)
pri-2NP_001251922.1 PriL_PriS_Eukaryotic 43..475 CDD:143474 148/458 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167230
Domainoid 1 1.000 184 1.000 Domainoid score I2034
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H731
Inparanoid 1 1.050 245 1.000 Inparanoid score I2052
Isobase 1 0.950 - 0 Normalized mean entropy S1310
OMA 1 1.010 - - QHG53502
OrthoDB 1 1.010 - - D222812at33208
OrthoFinder 1 1.000 - - FOG0005104
OrthoInspector 1 1.000 - - oto19210
orthoMCL 1 0.900 - - OOG6_102391
Panther 1 1.100 - - LDO PTHR10537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R981
SonicParanoid 1 1.000 - - X3626
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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