DRSC/TRiP Functional Genomics Resources

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Protein Alignment Acam and pvalb4

DIOPT Version :9

Sequence 1:NP_001163737.1 Gene:Acam / 44913 FlyBaseID:FBgn0011273 Length:148 Species:Drosophila melanogaster
Sequence 2:NP_997948.2 Gene:pvalb4 / 337731 ZFINID:ZDB-GENE-040625-48 Length:109 Species:Danio rerio


Alignment Length:76 Identity:25/76 - (32%)
Similarity:40/76 - (52%) Gaps:3/76 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 AKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINL---GEKVTDEEIDEMIREADFDGDG 134
            ||....:.:.:|:::||.|.|:|..|||...||:..:.|.   ...:||.|....::..|.||||
Zfish    32 AKVGLASKSADEVKKAFAIIDQDKSGFIEEEELKLFLQNFKADARALTDGETKTFLKAGDSDGDG 96

  Fly   135 MINYEEFVWMI 145
            .|..:||..::
Zfish    97 KIGIDEFAALV 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AcamNP_001163737.1 PTZ00184 3..148 CDD:185504 25/76 (33%)
EFh 11..73 CDD:238008 25/76 (33%)
EFh 84..146 CDD:238008 23/65 (35%)
pvalb4NP_997948.2 EFh 43..108 CDD:238008 23/65 (35%)
EF-hand_7 44..107 CDD:290234 22/62 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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