DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Larp7 and La2

DIOPT Version :9

Sequence 1:NP_524795.2 Gene:Larp7 / 44900 FlyBaseID:FBgn0260771 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_178106.2 Gene:La2 / 844327 AraportID:AT1G79880 Length:399 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp7NP_524795.2 LA 57..135 CDD:128955
RRM <116..>208 CDD:223796
RRM1_LARP7 148..>209 CDD:240736
RRM2_LARP7 471..548 CDD:240986
La2NP_178106.2 LA_like_plant 9..98 CDD:153399
RRM_SF 116..187 CDD:388407
RRM2_La_like 288..350 CDD:240738
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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