DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Larp7 and La1

DIOPT Version :9

Sequence 1:NP_524795.2 Gene:Larp7 / 44900 FlyBaseID:FBgn0260771 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_567904.1 Gene:La1 / 829408 AraportID:AT4G32720 Length:433 Species:Arabidopsis thaliana


Alignment Length:561 Identity:111/561 - (19%)
Similarity:184/561 - (32%) Gaps:188/561 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 QMEFYFGDANLSKDRFLRRYV--EQDPYVPLEIFLTFNKIK-----------TLTQD-VQQIAKA 116
            |:||||.|:||..|.||::.|  .:|..|.|.:..:|:|::           .:.:| ::.:|..
plant    17 QVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDTIKAVADT 81

  Fly   117 LSNSQLLELDETELKVKRRTKLPDQRD----VNDKTLYVEALPANATHDWLKEVFSRYGPVAYVS 177
            |..|..|::.:...||.|.|:|....|    :|.:|:.......:...:.::..||:||.|..|.
plant    82 LRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYDVKREDVESFFSQYGKVNSVR 146

  Fly   178 LPHYPGTKKI-KEFAFIEFEKSGSLEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAE 241
            :|.:....:| ...|.:||......:..:|......|                    |:::.|  
plant   147 MPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLVFAG--------------------QELELK-- 189

  Fly   242 QPQSEAEQVELPKRNLKREATDKDREEIHEVKRVKLEEGQPSETSTAGETASETD-AEG-----T 300
                       ||:....| .:||..:....:..|....|.:.:.....:|.|.| .:|     |
plant   190 -----------PKKEFDNE-REKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIISFT 242

  Fly   301 AEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKTSWSSMRNKYLNLQRR 365
            .:.|.:|..||....:|...|                                            
plant   243 LKRSAEEGTTEQKSSEEPTDK-------------------------------------------- 263

  Fly   366 IVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPSQLPEAVKEEETGGEVPSDGGEGAVEAAPVP 430
                                     |...:..||:..|:|  ::|..|||.::|.|.  |.....
plant   264 -------------------------TMEESETKPADTPDA--DKENTGEVQAEGAED--EDDEKE 299

  Fly   431 AKRRKAVHKMNMNFYGAGGVESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQY 495
            .|...|.||.|                                      |.....::.||...::
plant   300 EKGALATHKDN--------------------------------------KDVVLREDLKAVFGKF 326

  Fly   496 PDIKYVDIKEGDQVALLRLGTPAAAEEL-LRQVNCSERQLKV---------LSGQQETLYWRKI- 549
            .|:|:||.|.|.:...||...|.|:::. ...|..:|..|.|         :.|:.|..||..: 
plant   327 GDVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYWTLLR 391

  Fly   550 EQDREAKLS-------KKVRVQQKRGREKVGKMLGKHIKFD 583
            .:||..|..       :..|..:|||.:..|....|..|.:
plant   392 SKDRFDKGGRGGRGGRRGGRFGRKRGSDSPGGRWNKSQKVE 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp7NP_524795.2 LA 57..135 CDD:128955 24/82 (29%)
RRM <116..>208 CDD:223796 23/96 (24%)
RRM1_LARP7 148..>209 CDD:240736 13/61 (21%)
RRM2_LARP7 471..548 CDD:240986 21/86 (24%)
La1NP_567904.1 LA_like_plant 10..99 CDD:153399 24/81 (30%)
RRM1_La 117..189 CDD:409733 15/91 (16%)
RRM_SF 316..388 CDD:418427 19/71 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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