DRSC/TRiP Functional Genomics Resources

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Protein Alignment Larp7 and larp6

DIOPT Version :10

Sequence 1:NP_524795.2 Gene:Larp7 / 44900 FlyBaseID:FBgn0260771 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_012825802.1 Gene:larp6 / 493506 XenbaseID:XB-GENE-493801 Length:769 Species:Xenopus tropicalis


Alignment Length:529 Identity:112/529 - (21%)
Similarity:184/529 - (34%) Gaps:175/529 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAKSIEKEK-----GEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDASPDKKDGGRKRKRHLFN 61
            :|::.::||     |:..|..::.:.....|.|...|.:..|...:...||.:         |..
 Frog   322 SAENEDQEKGLMEAGDCSEDDSARQDKYSGAATSGGENDGDELDQDWKPPDAE---------LIQ 377

  Fly    62 SIRGQMEFYFGDANLSKDRFLRRYVEQDP--YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLE 124
            .:..|:|:|..|.||.||.||.::|.::.  :|.:::..:|.|:|.||:|.:..|.||..|.|||
 Frog   378 KLITQIEYYLSDENLEKDAFLLKHVRRNKMGFVSVKLLTSFKKVKHLTRDWRTTAYALRYSNLLE 442

  Fly   125 LDETELKVKRRTKLP--DQRDVNDKTLYVEAL--------------------------------- 154
            |:|...|::|:|.:|  ...::..|.|.|..|                                 
 Frog   443 LNEDNRKIRRKTPVPVFPSENLPSKMLLVYDLHFIPELNCLGKEQENGGMQEKVMEHLLKSFGTF 507

  Fly   155 ----------PANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGSLEKAVKAFA 209
                      |.......:|...|||..|         ||   |:.|.:|||:   :|.|:||  
 Frog   508 GVISSIRILKPGRDLPSDVKRFSSRYSQV---------GT---KDCAIVEFEE---VEAAIKA-- 555

  Fly   210 QIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQVELPKRNLKREATDKDREEIHEVKR 274
              ....:||:|..|...|.....:.                  ||:.:::   ||.:||  :.|.
 Frog   556 --HDTFNVESDTEDGLKVVLIGMKP------------------PKKKIQK---DKSKEE--DSKN 595

  Fly   275 V--------KLEEGQPSETSTAGETASETDAEGTA-------------------------EASEQ 306
            |        ::||.|.....:...::||.|:..|:                         .||.:
 Frog   596 VRKNKSLNKRVEELQYIGDESTVYSSSEPDSNPTSPMVGRKIQSTNKLSPSAYPNNHLSPNASPR 660

  Fly   307 EDKTEATDGDEAAKKRRRKRKKKAIVD--KPNIEPSALEL----KVLPKTS-WSSMRNKYLNLQR 364
            .....:..|      :|:..|...:.|  .|.|.....|.    .:.|.:| |...|.     |.
 Frog   661 NSPWSSPCG------QRKGVKHSPLADSMSPEISRKCTEYSSDSSITPSSSPWVQRRR-----QA 714

  Fly   365 RIVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPSQLPEAVKEEETGGEVPSDGGEGAVEAAPV 429
            :.|::.||.:   ..|...:...:.....|...:..:.|:..|....|||               
 Frog   715 QTVTQEKSPV---GSPMLGRKIQNADGLPPGVLRLPRGPDGTKGFHNGGE--------------- 761

  Fly   430 PAKRRKAVH 438
               |.|.||
 Frog   762 ---RNKPVH 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Larp7NP_524795.2 LA 57..135 CDD:128955 29/79 (37%)
RRM1_LARP7 148..220 CDD:409732 22/114 (19%)
RRM2_LARP7 471..548 CDD:409958
larp6XP_012825802.1 LARP_6 376..452 CDD:153402 28/75 (37%)
RRM_LARP6 467..575 CDD:409731 26/126 (21%)
SUZ-C 727..757 CDD:463745 4/29 (14%)
Blue background indicates that the domain is not in the aligned region.

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