DRSC/TRiP Functional Genomics Resources

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Protein Alignment ph-d and Sfmbt2

DIOPT Version :9

Sequence 1:NP_524794.2 Gene:ph-d / 44889 FlyBaseID:FBgn0004860 Length:1537 Species:Drosophila melanogaster
Sequence 2:NP_001185737.1 Gene:Sfmbt2 / 353282 MGIID:2447794 Length:975 Species:Mus musculus


Alignment Length:631 Identity:131/631 - (20%)
Similarity:214/631 - (33%) Gaps:178/631 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1004 QQLGLPSLTPTTPSPTTNPILAMTSMMNATVGHLSTAPPVSVSSTAV--------TPSSGQLVTL 1060
            :.:.|.::.|..|                  |.:..|..|||....:        ||....:|.:
Mouse   408 KNMKLEAVNPVNP------------------GEVCVATVVSVKGRLLWLHLEGLETPMPDIIVDM 454

  Fly  1061 SS----------ASSGGGAGFPATPTKETPSKGPTAT---------LVPIDSPKTPVSGKDTCTT 1106
            .|          |:|     :|.|...:..||....|         |.|:...|.|   .:.|..
Mouse   455 DSMDIFPVGWCEANS-----YPLTTPYKASSKSKRKTVHFKMEKQLLSPVPIEKIP---HELCLL 511

  Fly  1107 P--KSSTPATVSAS-------VEASSSTGEALSNGDASDRSSTPSKGATTPTSKQ-----SNAAV 1157
            |  ..|....::|.       |.....:|..|:.|..|:...:...|......|:     :|||.
Mouse   512 PPQMDSPVGAINAKYCCPQLFVNHRCFSGPFLNKGRISELPQSVGPGMCVLVLKEILTLITNAAY 576

  Fly  1158 QPPSSTIPNSVSGKEEPKLTTCGSLTSATSTSTTTTITNGIGVARTTAST------------AVS 1210
            :|  ..:...:...|:|:..:...:..|.....|....  :.:.||....            ...
Mouse   577 KP--GRVLRELQLVEDPEWNSQEEILKAKYGGKTYRAV--VKIVRTADQVMNFCRQVCAKLECCP 637

  Fly  1211 TASTTTTSSGTFTTSCTSTTTTTTSSISNGSKDLPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQ 1275
            ...:....|.|...:|:..|.|..:....||...|.:.:|.:..:|...   :|:|..|     |
Mouse   638 NLLSPVLISETCPENCSVHTKTRYNKREKGSSLSPASELKDDSASHATK---LQKAKIP-----Q 694

  Fly  1276 RYADKDVSDEPPKKKATMQEDIKLSGIASAPGSDMVACEQCGKMEHKAKLKRKRYCSPGCSRQAK 1340
            .|       ...|::..:|..:::|.|.:.|               |:..:|||..|....::.|
Mouse   695 TY-------YYGKRRRVIQSSLRVSNIETPP---------------KSTRRRKRRKSVYVQKRRK 737

  Fly  1341 NGI-------GGVGSGETNGLGTGGIVGVDAM-----------ALVDRLDEAMAE---------- 1377
            :.|       .||.:|....:..|...|:.|.           :|.:.|.||:.|          
Mouse   738 SAIVVPAGVPAGVPAGVPEDIPAGIPEGIPASIPESIPEGIPESLPESLPEAIPESIPKGSAQKT 802

  Fly  1378 --EKMQT------------ESYQTVSDALPIQAATPEVPPISMPVLAAMSTSSPLSLPLTLPLPI 1428
              ||.:|            .:|||.:.|..:..|.|.      ..:.....|..|..|     |:
Mouse   803 EQEKRETLDTARKKTGYHGPAYQTDTSAAQVPFARPR------RAVTLRRNSEALKRP-----PV 856

  Fly  1429 AIAPTV-SLPVVSAG---VVAPVLAI--PSSNINGSDRPPI-----SSWSVEEVSNFIRELPGCQ 1482
            ..|..| ::|..::.   |..|::.|  |..:....:...|     ..|||.:|..||: |..|.
Mouse   857 ERARRVRTVPTTASSNNRVKGPLVRIVKPEDSSQSDEEKLILESNPLEWSVTDVVRFIK-LTDCA 920

  Fly  1483 DYVDDFIQQEIDGQALLLLKENHLVNAMGMKLGPALKIVAKVESIK 1528
            .....|.:|:|||||||||....:...|.:|||||:|:..::|.:|
Mouse   921 PLARIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVK 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-dNP_524794.2 SAM_Ph1,2,3 1461..1529 CDD:188976 29/73 (40%)
SAM 1464..1529 CDD:197735 28/65 (43%)
Sfmbt2NP_001185737.1 MBT 47..143 CDD:214723
MBT 155..255 CDD:214723
MBT 275..371 CDD:214723
MBT 383..475 CDD:214723 16/89 (18%)
SLED 528..643 CDD:371916 17/118 (14%)
SAM_Scm-like-4MBT1,2 893..975 CDD:188980 29/75 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8350
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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