DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ph-d and Samuel

DIOPT Version :9

Sequence 1:NP_524794.2 Gene:ph-d / 44889 FlyBaseID:FBgn0004860 Length:1537 Species:Drosophila melanogaster
Sequence 2:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster


Alignment Length:1210 Identity:234/1210 - (19%)
Similarity:372/1210 - (30%) Gaps:450/1210 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 QQQQLTAALAKVGVDAQGKLAQKVVQKVTTTSSTVQAATGPGSTGSTQTQQVQQVQQQQQQTTQT 450
            ||:...|..|.||..:..:.|....|:..||:||           :|:.:.::::....:|..:.
  Fly    27 QQKPAKATTAIVGGRSAAQPATHDDQEAATTAST-----------ATKRKHLERLASDLRQLGKK 80

  Fly   451 TQQCVQVSQSTLPVGVGGQSVQTAQLLNAGQAQQMQIPWFWQNAAGLQPFGSNQIILRNQPD--- 512
            .::    |:|..|........:||::|:             :.:..|..:|:.:...:...:   
  Fly    81 GRR----SRSVSPCSRYPAVAETARMLS-------------ERSLLLSGYGAIESSAKKLSEAAT 128

  Fly   513 ---GTQGMFIQQQPATQTLQTQQNQIIQCNVTQTPTKARTQLDA---LAPKQQQQQQQVGTTNQT 571
               |..|.....|.||.|                    .:||.|   .|..........|:|..|
  Fly   129 GGAGGGGGGAAGQAATPT--------------------TSQLSAPASSASSSSMSSSSAGSTCTT 173

  Fly   572 QQQQLAVATAQLQQQQQQLTAAAL-QRPGAPVMP-HNGTQVRPASSVSTQTAQNQSLLKAKMRNK 634
            .....:||.|......:::....: ....||::. ||.......::.::.::.:.|::     |.
  Fly   174 NANTASVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNNNNTINNNNSSSSSSSSII-----NN 233

  Fly   635 QQPVRPALA-TLKTE-IGQVAGQNKVVGHLT--TVQQQQQATNLQQVVNAAGNKMVVMSTTGTPI 695
            .|..:|:|. ::|.| :...:..:...|.||  :..:.:.||........||             
  Fly   234 HQSSQPSLGHSVKRERLSPGSNSSSHNGELTVSSFARSRSATPSSSSYRGAG------------- 285

  Fly   696 TLQNGQTLHAATAAGVDKQQQQLQLFQKQHILQQQMLQQQIAAIQMQQQQAAVQAQQQQQQQVSQ 760
                     .....||....||                      |.||||.::| |||:....|.
  Fly   286 ---------GGAGGGVSPSHQQ----------------------QQQQQQQSLQ-QQQRLSPPSG 318

  Fly   761 QQQVNAQQQQAVAQQQQAVAQAQQQQREQQQQVAQAQAQHQQALANATQQILQVAPNQFITSHQQ 825
            .....|....:::....|.|.|.          |.|.|.....|.|.:..:|.            
  Fly   319 PSMATATTTSSLSSSSSASASAS----------ASASAATHMPLHNLSTNLLN------------ 361

  Fly   826 QQQQQLHNQLIQQQLQQQAQAQVQAQVQAQAQQQQQQREQQQNIIQQIV-----VQQSTGATS-- 883
                                     .:|..|..|||.|....|....|.     .:...||.|  
  Fly   362 -------------------------SIQQAAASQQQLRSSNSNSSSNISGSSNNTKSDGGAASNA 401

  Fly   884 -----------------QQQQQQPQQQSGQLQLSSVPFSVSPSMTAEDIAG-----------ITS 920
                             :.....|...:...:.|....|.| :.||...||           ..|
  Fly   402 TDFSTRNYSDIMRCLAAKYNNANPNDNNATRRNSYYDGSTS-ATTATGGAGGGGGGAGGSNSAPS 465

  Fly   921 SALQEALSVSGAIFQTTKPITCSSSTLPTSSVVTITSQSSTPLVTSSTVASMQQAQTQGTQIHQH 985
            |||:.|.|.:|:...|.|.::.|:::...|:.|:::.:|....|..:.|..              
  Fly   466 SALKTASSSTGSTTTTAKKLSPSAASAANSAAVSLSKESKVSAVGGAGVGG-------------- 516

  Fly   986 QQLISATIAGGSQQQQQQQQLGLPSLTPTTPSPTTNPILAMTSMMNATVGHLSTAP------PVS 1044
              .::::..|||    ...||..|   ||.||||..    ..|.|.|.|...|.:|      |.|
  Fly   517 --AVASSGGGGS----SMSQLAPP---PTAPSPTEQ----AKSQMAAVVAAASVSPFMTNFLPFS 568

  Fly  1045 --VSSTAVTPSSGQ-LVTLSSASSGGGAGFPATPTKETPSKGPTATLVPIDSPKTPVSGKDTCTT 1106
              :....:..||.| |:||:.|..  .|........:....|..|:     ||....:|     |
  Fly   569 SGIFPPLIDMSSTQALLTLARAVK--DAEIQEILRSKQQRSGSNAS-----SPSASAAG-----T 621

  Fly  1107 PKSSTPATVSASVEASSSTGEALSNGDASDRSSTPSKGATTPTSKQSNAAVQPPSSTIPNSVSGK 1171
            |:||:....:....|...|...:.:.....:.....:.......:||..|            |.:
  Fly   622 PRSSSTLNAALHQAAQFVTPALIYSAQLQQQQQQQQQQHQRQQQQQSQHA------------SRQ 674

  Fly  1172 EEPKLTTCGSLTSATSTSTTTTITNGIGVARTTASTAVSTASTTTTSSGTF-------TTSCTST 1229
            ..|:         :|:.|||.......|...:.||.|....|:...::..|       :|:.|:|
  Fly   675 SSPR---------STNDSTTVAPIGDGGGGSSIASAAPLDLSSQPPAAKRFKAERRASSTATTAT 730

  Fly  1230 TTTTTSSISNGSKDLPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKATMQ 1294
            |.||.||.|.                             |.|              ||.::   .
  Fly   731 TATTGSSTST-----------------------------PSP--------------PPLEQ---H 749

  Fly  1295 EDIKLSGIASAPGSDMVACEQCGKMEHKAKLKRKRYCSPGCSRQAKNGIG---GVGSGETNGLGT 1356
            :||. ||.|:|.                                    :|   |.|:||::..|:
  Fly   750 DDIN-SGNANAT------------------------------------LGTRSGTGTGESSAAGS 777

  Fly  1357 GGIVGVDAMALVDRLDEAMAEEKMQTESYQTVSDALPIQAATPEVPPISMPVLAAMSTSSPLSLP 1421
            |  .||           |.|..:.|.:|.:                                   
  Fly   778 G--AGV-----------AKARRRCQAQSEE----------------------------------- 794

  Fly  1422 LTLPLPIAIAPTVSLPVVSAGVVAPVLAIPSSNINGSDRPPISSWSVEEVSNFIRELPGCQDYVD 1486
                                                     ::||||::|..|:..:..|.:||.
  Fly   795 -----------------------------------------VNSWSVDDVCGFVGGIDICAEYVQ 818

  Fly  1487 DFIQQEIDGQALLLLKENHLVNAMGMKLGPALK---IVAK 1523
            .|..|.|||..|.||.|:||||::|||||||||   |:||
  Fly   819 SFRDQSIDGTGLPLLTEDHLVNSLGMKLGPALKLRSILAK 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-dNP_524794.2 SAM_Ph1,2,3 1461..1529 CDD:188976 34/66 (52%)
SAM 1464..1529 CDD:197735 34/63 (54%)
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 34/64 (53%)
SAM 795..852 CDD:197735 30/56 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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