DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ph-d and Phc3

DIOPT Version :9

Sequence 1:NP_524794.2 Gene:ph-d / 44889 FlyBaseID:FBgn0004860 Length:1537 Species:Drosophila melanogaster
Sequence 2:XP_006232288.1 Gene:Phc3 / 310258 RGDID:1307998 Length:1011 Species:Rattus norvegicus


Alignment Length:1197 Identity:274/1197 - (22%)
Similarity:422/1197 - (35%) Gaps:359/1197 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   500 FGSNQIILRNQP-DGTQGMFIQQQPATQTLQTQQN------------------QIIQCNVTQTPT 545
            |..:...:.::| .||..........|.|:.|..:                  |:||..:.:.|:
  Rat     6 FKDHSTAMESEPSSGTSVSTTASSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPS 70

  Fly   546 KARTQLDALAPKQQQQQQQVGTTNQTQQQQLAVATAQLQQQ----QQQLTAAALQ---RPGAPVM 603
            .|          .|..||...    .|||.|.:.||.||||    .|..:.||:|   ..|.|  
  Rat    71 SA----------AQYLQQMYA----AQQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRP-- 119

  Fly   604 PHNGTQVRPASSVSTQTAQNQSLLK-------AKMRNKQQPVRPALATLKTEIGQVAGQNKVVGH 661
                 ...|..||:.|::.:|:.:.       |::.::.|      |:..|. |.:..|..::|.
  Rat   120 -----STSPTGSVTQQSSMSQTSINLSTSPTPAQLMSRSQ------ASSSTS-GSITQQTMLLGS 172

  Fly   662 LTTVQQQQQATNLQQVVNAAGNKMVVMSTTGTPITLQNGQTLHAATAAGVDKQQQQLQLFQKQHI 726
            .:......||   |..:.|   :|::.    ||          |.|.|.|   |..:.:......
  Rat   173 TSPTLTASQA---QMYLRA---QMLIF----TP----------ATTVAAV---QSDIPVVSSSPS 214

  Fly   727 LQQQMLQQQIAAIQMQQQQAAVQAQQQQQQQVSQQQQVNAQQQQAVAQQQQAVAQAQQQQREQQQ 791
            ...|....|:..:.::.|:..|.:..|.....|..|    .|...:...:..|..::..||:...
  Rat   215 PSCQSAAAQVQNLTLRSQKLGVLSSSQNGPPKSAGQ----TQSLTICHNKTTVTSSKISQRDPSP 275

  Fly   792 QVAQAQAQHQQALANA---TQQILQ-VAPNQF--ITSHQQQQQQQL----------HNQLIQQQL 840
            :..:..:...::.:.|   |..|.| :||..:  |..|...:.||:          |:|||.||.
  Rat   276 ESKKGGSPGLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPPKVSHHQLILQQQ 340

  Fly   841 QQQAQAQVQAQVQAQAQQQQQQREQQQNIIQQIVVQQSTGATSQQQQQQPQQQSGQLQLSSVPFS 905
            |||.|     .:..|:..|.....      |..:...:.|.:......|.||....:|....|.:
  Rat   341 QQQIQ-----PITLQSPSQDPPPS------QHCIPLPNHGLSPASSNAQSQQHCSPIQSHPPPLT 394

  Fly   906 VSPSMTAEDIAGITSSALQEALSVSGAIFQTTKPITCSSSTLPTSSVVTITSQSSTPLVTSSTVA 970
            ||||.         :.:.|:::.||       .|...|.|..||..:.........|||:|:   
  Rat   395 VSPSQ---------AQSAQQSVVVS-------PPPAHSPSQSPTIIIHPQALVQPHPLVSSA--- 440

  Fly   971 SMQQAQTQGTQIHQHQQLISATIAGGSQQQQQQQQLGLPSLTPTTPSPTTNPILAMTSMMNATVG 1035
                       :|....|..||    :.|.|...||.|||..|...||..:            :|
  Rat   441 -----------LHTGPNLQQAT----ADQVQSTAQLNLPSHLPLPASPVVH------------IG 478

  Fly  1036 HLSTAPPVSVSSTAVTPSS-GQLVTLSSASSGGGAGFPATPTKETPSKGPTATLVPIDSPKTPVS 1099
            .:..:..||.....|:|:| .|..||.|:.                        :||.:|     
  Rat   479 PVQQSALVSPGQQIVSPTSHQQYSTLQSSP------------------------IPIATP----- 514

  Fly  1100 GKDTCTTPKSSTPATVSASVEASSSTGEALSNGD---------------ASDRSSTPSKGATTPT 1149
             .....:|.:..|.....|:::.....|.||.|.               |......|.:....|.
  Rat   515 -PQMSASPPAQIPPLPLQSMQSLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPPQ 578

  Fly  1150 SKQSNAAVQPPSSTIP----------------------NSVSGKEEPKLT-TCGSL--TSATSTS 1189
            :...|..||||:...|                      ..|..:|.|:.: .|..:  |....|.
  Rat   579 TVAVNLQVQPPAPVDPPVGMHLNQCHLHKVFSLKVYQVEDVCEEERPEESDECARMDRTPPPPTL 643

  Fly  1190 TTTTITNGIG-----------------VARTTASTAVSTASTTTTSS--------GTFTTSCTST 1229
            :...||.|.|                 ||..:||...|.:..|..|:        ...|.|.:::
  Rat   644 SPAAITVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPTHVSAPAPPLLMPAASTRSSSTS 708

  Fly  1230 TTTTTSSISNGSKDLPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKA--- 1291
            ..::|.|:.|..   |:|::||.:|||||:||:|||..|||||:|...    :.::|.||:.   
  Rat   709 LASSTPSLENKP---PQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSL----LIEQPVKKRPLLD 766

  Fly  1292 -------------------------TMQEDIKLSGIASAPGSDMVACEQCGKMEHKAK-LKRKRY 1330
                                     |..||:..........|:::.||.||||.:..: |:.||:
  Rat   767 NQVVNSVCVQPELQNNTKHADNSSDTEMEDMIAEETLEEMDSELLKCEFCGKMGYPNEFLRSKRF 831

  Fly  1331 CSPGCSRQAKNGIGGVGSGETNGLGTGGIVGVDAMALVDRLDEAMAEEKMQTESYQTVSD--ALP 1393
            |:..|:::.                                 .....:|.....:....|  :|.
  Rat   832 CTMSCAKRY---------------------------------NVSCSKKFALSRWNRKPDNQSLG 863

  Fly  1394 IQAATPEVPPISMPVLAAMSTSSPLSLPLTLPLPIAIAPTVSLPVVSAGVV-------------- 1444
            .:...|..|.      .|........||:|.|.......:...||.||...              
  Rat   864 HRGRRPSGPE------GAAREHILRQLPITYPSAEEDLASRDDPVPSAMTTRLRRQSEREREREL 922

  Fly  1445 --APVLAIPSSNINGSDRPPI-----SSWSVEEVSNFIRELPGCQDYVDDFIQQEIDGQALLLLK 1502
              ..:..:|.:    ||..|:     |.|:|::|..||..||||||..|:|..||||||||||||
  Rat   923 RDVRIRKMPEN----SDLLPVAQTEPSIWTVDDVWAFIHSLPGCQDVADEFRAQEIDGQALLLLK 983

  Fly  1503 ENHLVNAMGMKLGPALKIVAKVESIKE 1529
            |:||::.|.|||||||||.|::.|:|:
  Rat   984 EDHLMSTMNMKLGPALKICARINSLKD 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-dNP_524794.2 SAM_Ph1,2,3 1461..1529 CDD:188976 42/72 (58%)
SAM 1464..1529 CDD:197735 41/64 (64%)
Phc3XP_006232288.1 SAM_Ph1,2,3 942..1010 CDD:188976 41/67 (61%)
SAM 944..1011 CDD:197735 42/67 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352158
Domainoid 1 1.000 89 1.000 Domainoid score I7650
eggNOG 1 0.900 - - E1_28JS2
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9024
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.840

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