DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ph-d and phc1

DIOPT Version :10

Sequence 1:NP_524794.2 Gene:ph-d / 44889 FlyBaseID:FBgn0004860 Length:1537 Species:Drosophila melanogaster
Sequence 2:XP_031761253.1 Gene:phc1 / 100488113 XenbaseID:XB-GENE-1013248 Length:852 Species:Xenopus tropicalis


Alignment Length:944 Identity:245/944 - (25%)
Similarity:359/944 - (38%) Gaps:211/944 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   698 QNGQTLHAATAAGVDKQQQ--QLQLFQKQHI---------------LQQQMLQQQIAAIQMQQ-- 743
            ||..:.:.::|:|...:.|  |:.|:::|.:               ..|.|||||::..|:..  
 Frog     7 QNSSSTNGSSASGSSTRPQISQMSLYERQAVQALQALHRQPNAAQYFHQLMLQQQLSNAQLHSLA 71

  Fly   744 --QQAAVQAQQQ---------QQQQVSQQQQVN----------AQQQQAVAQQQQAVAQAQQQQR 787
              |||.:.|.:|         ||...:|..|.|          ::.|...|.....:.|:.....
 Frog    72 AVQQATIAASRQAASPNTGSAQQTNTTQGSQANLSTSSSAQLLSRTQNVTAPSATTLTQSVLLSN 136

  Fly   788 EQQQQVAQAQAQ---HQQALANATQQILQVAPNQFITSHQQQQQQQLHNQLIQQQLQQQAQAQVQ 849
            .....:.|:|.|   .|..|.|    :|||       :....:...|::|||   |.......||
 Frog   137 ASSPPLGQSQTQMYLRQPQLGN----LLQV-------NRSLGRGVPLNSQLI---LMPNGSVAVQ 187

  Fly   850 AQVQA-QAQQQQQQREQQQNII----QQIVVQQSTGATSQQ-------QQQQPQQQSGQLQLSS- 901
            .:|.: |.|...|..:|.||:.    |......:.|||..|       .|..|...:...|:.| 
 Frog   188 QEVTSPQNQGVHQDSDQVQNLAVRGQQTAATTSAAGATISQPAPLATKPQIHPASSAAPTQIPSP 252

  Fly   902 -VPFSVSPSMTAEDIAGITSSALQ---EALSVSGAIFQTTKPITCSSSTLPTSSVVTITSQSSTP 962
             ||.||...:.:  ..|..|...|   |.....|...|.:..|..:.:..|..:...|:|.:.|.
 Frog   253 NVPQSVKNPVGS--TGGTVSQGSQTEAEGRKADGEGVQQSVGINLTRAATPAPNQTLISSATYTH 315

  Fly   963 LVTSSTVASMQQAQTQGTQIHQHQ--QLISATIAGGSQQQQQQQQLGLPSLTPTTPSPTTNPILA 1025
            :...|.:...|....|...||||:  ||:.|:......|.|...|.||       .:|.|...|.
 Frog   316 IQPHSVLQQKQVVFQQQIAIHQHRQSQLLHASTHLQLAQPQAATQQGL-------QTPGTQQTLV 373

  Fly  1026 MTSMMNAT-VGHLSTAPPVSVS----STAVTPSSGQLVTLSSASSGGGAGFPATPTKETP----- 1080
            :..|:.|| ...:.|..||.:.    ...|.|.:.| ..|.:.:|.|....| .|:...|     
 Frog   374 VQPMLQATSESAIPTKAPVPIQPKQPGKGVPPLNLQ-GHLGAKASQGTRPLP-IPSPSQPHIPVQ 436

  Fly  1081 -----SKGPT------ATLVPIDSPKTPVSGKDTCTTPKSSTPATVSASVEASSSTGEALSNGDA 1134
                 .:||.      ||.||     :..|.....|.|.|  ||.|::.|..:....:|...|..
 Frog   437 LVGARQQGPAQALALGATQVP-----SQASSMTQLTLPPS--PAPVASVVAGAVQESQAGFYGVL 494

  Fly  1135 SDRSSTPSKGATTPTSKQSNAAVQPPSSTIPNSVSGKEEPKLTTCGSLTSATSTSTTTTITNGIG 1199
            ..:.|.|.|........:.:.:|.|..::.|.......|...|......:||..|.|.|:     
 Frog   495 QGKLSGPGKRKAEVEDDRDDPSVLPVKASPPTDAPPTVEETSTPADKPEAATQVSPTLTV----- 554

  Fly  1200 VARTTASTAVSTASTTTTSSGTFTTSCTSTTTTTTSSISNGSKDLPKAMIKPNVLTHVIDGFIIQ 1264
                                    .:.||....:.||..:.....|:|::||.:|||:|:||:||
 Frog   555 ------------------------LAPTSVPALSISSRQHSDSKPPQAIVKPQILTHIIEGFVIQ 595

  Fly  1265 EANEPFPVTRQRYADKDVSDEPPKKKATMQEDIKLSGIASAP-------------GSDMVACEQC 1316
            |..|||||     ....:..||.|:.|:  :.:.|....|.|             .|.::.||.|
 Frog   596 EGAEPFPV-----GSPQLLKEPEKQAAS--DTVLLPPAESPPPQAVGDTAASDSGSSKLLKCEYC 653

  Fly  1317 GKMEHKAKLK-RKRYCS--------PGCSRQAKNGIGGVGSGETNGLGTGGIVGVDAMALVDRLD 1372
            ||.....:.: .||:||        ..||.|.:     :...:...|...|  ||.|.....|.:
 Frog   654 GKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFR-----LKRKKLKELQEAG--GVRARRRGPRRN 711

  Fly  1373 EA-MAEEKMQTESYQTVSDALPIQAATPEVPPISMPVLAAMSTSSPLSLPLTLPLPIAIAPTVSL 1436
            .: :|..|:|.:..:..|......::..|          |.|.:||            ..|:...
 Frog   712 SSEIARAKIQGKRMREDSSRGSDNSSYDE----------AFSPNSP------------APPSCRT 754

  Fly  1437 PVVSAGVVAPVLAIPSSNING------SDRPPISSWSVEEVSNFIRELPGCQDYVDDFIQQEIDG 1495
            |........|.....:|::.|      |..|  |.||||||..||..|.||||..:||..|||||
 Frog   755 PHGDRDGSTPTGGPSNSDLLGINPMFLSSNP--SRWSVEEVYEFISSLQGCQDLAEDFRSQEIDG 817

  Fly  1496 QALLLLKENHLVNAMGMKLGPALKIVAKVESIKE 1529
            ||||||||.||::|:.:||||||||.||:..:||
 Frog   818 QALLLLKEEHLMSALNIKLGPALKICAKINLLKE 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-dNP_524794.2 SAM_Ph1,2,3 1461..1529 CDD:188976 43/67 (64%)
phc1XP_031761253.1 PHA03247 <381..631 CDD:223021 70/294 (24%)
PHC2_SAM_assoc 678..783 CDD:465202 23/133 (17%)
SAM_Ph1,2,3 783..851 CDD:188976 43/69 (62%)

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