DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and itgb2

DIOPT Version :10

Sequence 1:NP_524793.2 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_686012.3 Gene:itgb2 / 557797 ZFINID:ZDB-GENE-110411-4 Length:768 Species:Danio rerio


Alignment Length:859 Identity:300/859 - (34%)
Similarity:446/859 - (51%) Gaps:120/859 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCIQT-EGCAWCMQPDF-----KGQS 67
            |..:||::.:...:..|....||    :|:||..      ||:: .|||||.:.:|     :..:
Zfish     6 CLKSLLLLLVGTQVYTQEQCLKA----SVNTCGD------CIKSGPGCAWCKELNFTKTGEQEAA 60

  Fly    68 RCYQNTSSL-----CPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSS 127
            ||  :|..|     |.:|...:|..:.|.:||..|.                             
Zfish    61 RC--DTVKLLLDRGCSKENIINPQNIFQNVVNKALV----------------------------- 94

  Fly   128 SSSFYSQSSSGSSSASGYEEYSAG-EIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLM 191
                                  || :.||||||.::|.||.......::.:.:||||||||||||
Zfish    95 ----------------------AGKDPVQIQPQEIQLNLRPGMPQTFQLRFKRAEGYPVDLYYLM 137

  Fly   192 DLSKSMEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPC----ENC 252
            |||.||:||.|.:..||:.:.|.:.|||.|..:||||||||.|:||..|...||:|||    |.|
Zfish   138 DLSYSMKDDLANVKNLGNDILEKLNRITGNARIGFGSFVDKTLLPYTDTNEAKLKHPCSDKNEPC 202

  Fly   253 KAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFS 317
            :..:|:|:.:||..|...|...||...:|||||.|||..||||||..|..:||| ..:.||||.:
Zfish   203 QPAFGFQHVLPLTANGNDFKELVKQQHISGNLDPPEGSLDAIMQAAVCLKEIGW-GNSTRLLVLA 266

  Fly   318 TDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQ 382
            ||.|||.||||||..::.||...|.|. |.:|:.|.:.||||:.|:.:|:::..|..|||||...
Zfish   267 TDDGFHMAGDGKLAAILEPNKETCQLD-KNKYSKSNIWDYPSVGQVARKLEEQNIQPIFAVTKKM 330

  Fly   383 LSVYEKLVEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMKDNATGD-VKITYFSSCLSNGP 446
            .:||.:|.:.|..|:...|..||:|||.|:.|.|..::|.|.|..:|..: :.:.|.|.|.....
Zfish   331 ETVYTELSKLIPKSAVGVLSEDSNNVVNLIVEAYNNLTSEVIMAHDALPNFISVKYSSKCTGGKT 395

  Fly   447 EVQTSKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPG 511
            .....||||:..|.:|.|...:.:.:|..|     |:..|.|:|.||.:::.:..||.|.|.:|.
Zfish   396 FSDNGKCDNVNIGLEVIFDVTVTVDRCIND-----QSFSIGPLGFNEKLKVNVQTLCECNCGDPP 455

  Fly   512 SIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECS--ATDLTSKFANDTSCRADSTSTTDCSGR 574
            .:     ...|.|.|..:||.|.|:|.:.|..|||:  ..|..|..|   .||.|  :.|:|.|:
Zfish   456 GV-----HPHCKGQGKVVCGSCKCNDGFIGQLCECTIGKKDEASFKA---QCRKD--NGTECEGK 510

  Fly   575 GHCVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCG 639
            |.||||.|:||......... |:|||||:..||:..|:.|:|  ||.|:||:|:|..|:.|:.|.
Zfish   511 GDCVCGRCQCHLTEGNGHFY-GEHCECDDEHCEKFDNKQCAG--HGKCKCGKCECDDGYEGTACH 572

  Fly   640 CQESNDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQCQMY 704
            |.:|::.|..  ...:|...|.|.|..|:|   ::| :.|.:|:.||||...||:...||:|..:
Zfish   573 CAKSDNECKI--DSHVCYNRGKCVCNQCEC---ERG-YKGPYCKTCPTCQRPCQQSGSCVECFAF 631

  Fly   705 KTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCKFMFKYSEQGELHVYA---Q 766
            ::|..:.  :|:..|.......|:|:    .|.:  |:..|::.|...|..:|:....:|:   .
Zfish   632 QSGPFEK--NCSLACKHLTIKIVDKL----VKSD--CRVKDKEGCWMAFTMTEELGFDLYSVSVL 688

  Fly   767 ENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWDTGENPIY 831
            :::|||....::.||.|.:|.:.|:||.:||:.|.:....|.||:.||||:|.:.| .:|.||::
Zfish   689 KDRECPEGPNIIAIVGGSLAGVALIGLLMLLIIKGVLYASDLREWRRFEKDRKHEK-TSGTNPLF 752

  Fly   832 KQATSTFKNPMYAG 845
            :.||:|.:||.::|
Zfish   753 QNATTTVQNPTFSG 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_524793.2 INB 45..505 CDD:197563 174/476 (37%)
Integrin_B_tail 692..775 CDD:462325 20/85 (24%)
Integrin_b_cyt 803..843 CDD:462580 17/39 (44%)
itgb2XP_686012.3 vWFA 32..449 CDD:469594 176/482 (37%)
Integrin_B_tail 619..697 CDD:462325 20/85 (24%)
Integrin_b_cyt 725..764 CDD:462580 17/39 (44%)

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