DRSC/TRiP Functional Genomics Resources

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Protein Alignment mys and Itgbl1

DIOPT Version :10

Sequence 1:NP_524793.2 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_001017505.1 Gene:Itgbl1 / 498564 RGDID:1560635 Length:494 Species:Rattus norvegicus


Alignment Length:413 Identity:111/413 - (26%)
Similarity:143/413 - (34%) Gaps:169/413 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 TYF----------------SSCLSNGP-EVQTSKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQT 483
            |||                .:|..:|. :....|||....|:...:..     ||     |.|:.
  Rat    83 TYFGPLCECHDWVCETYDGKTCAGHGTCDCGKCKCDVGWSGEACQYPT-----KC-----DLTKK 137

  Fly   484 IHISPVGINEVMQIQLTMLCS---------CPCENPGSIGY---------------QVQANSCSG 524
            |.      |::.:....::||         |.|:|....|.               ......|.|
  Rat   138 IS------NQMCKNSQDVICSNAGTCHCGRCKCDNSDGHGLIYGKFCECDDRECIDDETEEICGG 196

  Fly   525 HGTSMCGICNCDDSYFGNKCE--CSATDLTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKR 587
            ||...||.|.|:..:.|:|||  |..|...||      .|..|.....||.||.||||.|.||  
  Rat   197 HGKCYCGNCYCEAGWHGDKCEFQCDITPWESK------RRCTSPDGKVCSNRGTCVCGECSCH-- 253

  Fly   588 PNPIEI--------ISGKHCECDNFSC----ERNRNQLCSGPDHGTCECGRCKCKPGWTGSNC-- 638
                ::        |.|..||||...|    :|..:..|||  ||.|.||||.|:.||.|..|  
  Rat   254 ----DVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSG--HGQCNCGRCDCRAGWYGKKCEH 312

  Fly   639 -------------GCQESND--------------TCMPPG-------------------GGEICS 657
                         .||.|:|              ||.|||                   .|.:|.
  Rat   313 PKNCPLSAEESTRKCQGSSDLPCSGRGRCECGRCTCYPPGDSRVYGKTCECDDRRCEDLDGVVCG 377

  Fly   658 GHGTCECGVCKCTVNDQGRFSGRHCE---KC----------------PTCSGR--CQELKDCVQC 701
            |.|||.||.|.|   ::|.| |:.|:   ||                ..|||:  |.    |.:|
  Rat   378 GRGTCSCGRCVC---EKGWF-GKLCQHPRKCNMTEEQSRSLCESADGTLCSGKGSCH----CGKC 434

  Fly   702 -----QMYKTGELKNGDDCARNC 719
                 :.|.:||..:.||  |:|
  Rat   435 ICSGEEWYISGEFCDCDD--RDC 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_524793.2 INB 45..505 CDD:197563 17/94 (18%)
Integrin_B_tail 692..775 CDD:462325 10/33 (30%)
Integrin_b_cyt 803..843 CDD:462580
Itgbl1NP_001017505.1 Cysteine-rich tandem repeats 51..494 111/413 (27%)
Blue background indicates that the domain is not in the aligned region.

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