DRSC/TRiP Functional Genomics Resources

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Protein Alignment mys and itgb1b.2

DIOPT Version :10

Sequence 1:NP_524793.2 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_998093.2 Gene:itgb1b.2 / 405864 ZFINID:ZDB-GENE-040426-2598 Length:613 Species:Danio rerio


Alignment Length:695 Identity:253/695 - (36%)
Similarity:346/695 - (49%) Gaps:111/695 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLMIAIL---AAIAGQTDAQKAAKLTAVSTCASKEKCHTCIQT-EGCAWCMQPDFKGQSRCYQNT 73
            ||:.|:|   :.:...||:.....       |:.:.|..|||. ..|.||..|||| .||| .:.
Zfish     6 LLLSALLGFVSYVGANTDSNPCIS-------ANAKTCGECIQIGPQCVWCKDPDFK-PSRC-DDI 61

  Fly    74 SSL----CPEEFAYSP---ITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSF 131
            .|:    |..:...:|   :|:::   |..:||:                               
Zfish    62 ESMAKAGCTADGVENPRGAVTIDK---NKPVTNR------------------------------- 92

  Fly   132 YSQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKS 196
                     ...|.:.....||.|||||.::|.||..|.....:.:.:||.||:|||:|||||.|
Zfish    93 ---------KTDGGQNLRPDEITQIQPQKVKLNLRSGEAQKFTLKFKRAEDYPIDLYFLMDLSHS 148

  Fly   197 MEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPC--ENCKAPYGYQ 259
            |..:......||.:|:..||.||.:..:|||||..|   |.:.|      :||  :||.||:.|.
Zfish   149 MLSNLENFKNLGTELANEMKDITKDLRIGFGSFFRK---PSIQT------NPCFPDNCIAPFSYF 204

  Fly   260 NHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFHY 324
            |.:.|.::...|:.|:.....|||||:.|.|.:|:|||..|...|||| ...|||||.||||..:
Zfish   205 NVLSLTDDHALFTQEISKLKTSGNLDSSEAGLEALMQAAVCTDVIGWR-NVTRLLVFFTDAGLRF 268

  Fly   325 AGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKL 389
            :||||.||::..|||:| |.....||.|...||||:||:...|.||:|:.|||||.....:|::|
Zfish   269 SGDGKRGGIVRLNDGKC-LLDDNMYTRSDYSDYPSLSQLVDTVTDNSIHTIFAVTEQYRDLYQEL 332

  Fly   390 VEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMKDNATGD-VKITYFSSCLS--NGPEVQTS 451
            ...:..|:...|.....|:.:||.:....:||.|.::::...| |.|:|.|.|.:  ||......
Zfish   333 SAKVPNSAVGTLSTSGDNLAKLVIDALIPLSSEVIVENSKLPDGVSISYVSHCKNGVNGRGEDGR 397

  Fly   452 KCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIGYQ 516
            ||.|:..|.:|.|..:|....||...:  .:||.|.|:|.:|.::|.|..:|.|.|...|.    
Zfish   398 KCSNISIGDEVLFDIEITAKGCPSKGK--PETIKIKPLGFSEEVEIFLNYICECECHKDGI---- 456

  Fly   517 VQANS--CS-GHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRGHCV 578
              .||  || |.||..||:|.|::...|..|||: .||      |..|:.|.:|.. ||..|.||
Zfish   457 --KNSPECSGGQGTLECGVCRCNEGRSGRICECT-QDL------DAYCQMDMSSGI-CSNNGECV 511

  Fly   579 CGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQES 643
            ||.|||.||.||.|..||::|||:||||:|..|:||.|  ||.|.||:|.|:..:.||.|.|...
Zfish   512 CGTCECKKRENPEERYSGRYCECNNFSCDRFNNKLCGG--HGRCMCGQCACEFNYAGSACQCSMD 574

  Fly   644 NDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTC 688
            ..:|: .....||:|||.||||.|||..|.||          |||
Zfish   575 TSSCL-ASNKLICNGHGICECGQCKCLDNCQG----------PTC 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_524793.2 INB 45..505 CDD:197563 163/472 (35%)
Integrin_B_tail 692..775 CDD:462325
Integrin_b_cyt 803..843 CDD:462580
itgb1b.2NP_998093.2 vWFA 34..449 CDD:469594 163/472 (35%)
I-EGF_1 451..480 CDD:465729 13/34 (38%)
Blue background indicates that the domain is not in the aligned region.

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