DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and ITGB6

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_000879.2 Gene:ITGB6 / 3694 HGNCID:6161 Length:788 Species:Homo sapiens


Alignment Length:855 Identity:307/855 - (35%)
Similarity:455/855 - (53%) Gaps:103/855 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LALLMIAILAAIAGQTD-AQKAAKLTAVSTCASKEKCHTCIQTEGCAWCMQPDFKGQS----RCY 70
            :.:.::.:.....|:.| .|....|....||   |.|  .:....||||.|.:|...|    ||.
Human     1 MGIELLCLFFLFLGRNDHVQGGCALGGAETC---EDC--LLIGPQCAWCAQENFTHPSGVGERCD 60

  Fly    71 QNTSSL---CPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSFY 132
            ...:.|   |...|..:|::..:||.|..|                       |.....:||   
Human    61 TPANLLAKGCQLNFIENPVSQVEILKNKPL-----------------------SVGRQKNSS--- 99

  Fly   133 SQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSM 197
                               :||||.|||:.|.||......:::...|.|.||||||||||||.||
Human   100 -------------------DIVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASM 145

  Fly   198 EDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPCAN----CTATYGF 258
            :||...:..||.:||:.|.::|:||.|||||||:|.:.|:|.|.|:.:..||::    |..|:||
Human   146 DDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGF 210

  Fly   259 HHQMVLDKNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFH 323
            .|.:.|..:..:|...|||..:|.|:|.|||||||||||..|:.:||||..:..||||.:||..|
Human   211 KHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSH 275

  Fly   324 YAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEK 388
            :..|.||.|::.||||.|||..|.||:.||:.:||:|.|:..|:..|.:.:|||||..|:.:||.
Human   276 FGMDSKLAGIVIPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYEN 340

  Fly   389 LVEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMKDNATGD---VKITYFSSCLSNGPEVQ- 449
            ..:.|.|::...|..||.|:::|:...|.::.|.||::  ..||   :.:::.:.| :||...| 
Human   341 YAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELE--VLGDTEGLNLSFTAIC-NNGTLFQH 402

  Fly   450 TSKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIG 514
            ..||.::|.|...||:..:.:..|....|.    |.|.|||:.:.:::.::..|:|.|:.     
Human   403 QKKCSHMKVGDTASFSVTVNIPHCERRSRH----IIIKPVGLGDALELLVSPECNCDCQK----- 458

  Fly   515 YQVQANSCS---GHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRGH 576
             :|:.||..   |:|:..||:|.|...:.|.:|||....|::     .||: ::.....|||||.
Human   459 -EVEVNSSKCHHGNGSFQCGVCACHPGHMGPRCECGEDMLST-----DSCK-EAPDHPSCSGRGD 516

  Fly   577 CVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQ 641
            |.||.|.||.  :|...|.|.:|:||||||.|::..||.|  :|.|:||.|.|:.||||..|.|.
Human   517 CYCGQCICHL--SPYGNIYGPYCQCDNFSCVRHKGLLCGG--NGDCDCGECVCRSGWTGEYCNCT 577

  Fly   642 ESNDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQCQMYKT 706
            .|.|:|:.. .|.:|||.|.|.||.|.||  :.|. ||..||:||||...|...:.|::|.:...
Human   578 TSTDSCVSE-DGVLCSGRGDCVCGKCVCT--NPGA-SGPTCERCPTCGDPCNSKRSCIECHLSAA 638

  Fly   707 GELKNGDDCARNCTQFVPVGVEKVEIDETKDEQM-CKFFDEDDC--KFMFKYSEQGELHVYAQEN 768
            |:.:  ::|...| :.....:.:.| |.:||..: |....|::|  .|:.....:|:..:::...
Human   639 GQAR--EECVDKC-KLAGATISEEE-DFSKDGSVSCSLQGENECLITFLITTDNEGKTIIHSINE 699

  Fly   769 KECPAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQ 833
            |:||....:..|::||..||:|:|:.:|.:||||.:.|||:|.|:||.||..|||.||.||:|:.
Human   700 KDCPKPPNIPMIMLGVSLAILLIGVVLLCIWKLLVSFHDRKEVAKFEAERSKAKWQTGTNPLYRG 764

  Fly   834 ATSTFKNPMY 843
            :||||||..|
Human   765 STSTFKNVTY 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 168/474 (35%)
Integrin_B_tail 692..773 CDD:285239 17/83 (20%)
Integrin_b_cyt 803..843 CDD:285884 23/39 (59%)
ITGB6NP_000879.2 Integrin_beta 30..454 CDD:278776 171/480 (36%)
Cysteine-rich tandem repeats 456..619 74/182 (41%)
EGF_2 546..574 CDD:285248 14/29 (48%)
Integrin_B_tail 624..706 CDD:285239 18/85 (21%)
Interaction with HAX1. /evidence=ECO:0000269|PubMed:17545607 731..758 16/26 (62%)
Integrin_b_cyt 733..775 CDD:285884 25/42 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 262 1.000 Domainoid score I1947
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48224
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm41588
orthoMCL 1 0.900 - - OOG6_100678
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
98.830

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