DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and ITGB4

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_006721929.1 Gene:ITGB4 / 3691 HGNCID:6158 Length:1910 Species:Homo sapiens


Alignment Length:839 Identity:266/839 - (31%)
Similarity:402/839 - (47%) Gaps:140/839 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ERNRRCQLA---------LLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCIQTE-GCAWC 58
            :..||.::|         ||:.|:::.....|.|.:..|       |..:.|..|::.: .||:|
Human    29 QEGRRKRMAGPRPSPWARLLLAALISVSLSGTLANRCKK-------APVKSCTECVRVDKDCAYC 86

  Fly    59 MQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQYKAELAAGG--GGSAMSGSSSSS 121
            ....|:.: ||  ||                            :|||.|.|  ..|.:...||..
Human    87 TDEMFRDR-RC--NT----------------------------QAELLAAGCQRESIVVMESSFQ 120

  Fly   122 YSSSSSSSSFYSQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVD 186
            .:..:...:...:|                   |:.||.:|:.||..|:.:.::...:....|||
Human   121 ITEETQIDTTLRRS-------------------QMSPQGLRVRLRPGEERHFELEVFEPLESPVD 166

  Fly   187 LYYLMDLSKSMEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPCAN 251
            ||.|||.|.||.||...|..:|..|:..:.::|:::.:|||.|||||.:|.....|:.|.||..|
Human   167 LYILMDFSNSMSDDLDNLKKMGQNLARVLSQLTSDYTIGFGKFVDKVSVPQTDMRPEKLKEPWPN 231

  Fly   252 CTATYGFHHQMVLDKNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVF 316
            ....:.|.:.:.|.:::.:|.|:::...:||||||||||||||:|...|...||||..:..||||
Human   232 SDPPFSFKNVISLTEDVDEFRNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRPDSTHLLVF 296

  Fly   317 STDAGFHYAGDGK--LGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVT 379
            ||::.|||..||.  |.|:::.||..|||...|.||....|||||:..:.:.:..:.|..|||||
Human   297 STESAFHYEADGANVLAGIMSRNDERCHLDTTGTYTQYRTQDYPSVPTLVRLLAKHNIIPIFAVT 361

  Fly   380 ASQLSVYEKLVEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMK--DNATG---DVKITYFS 439
            ....|.||||..:...||...|..||||:|||::|.:.:|.|:::::  |:..|   :|....|.
Human   362 NYSYSYYEKLHTYFPVSSLGVLQEDSSNIVELLEEAFNRIRSNLDIRALDSPRGLRTEVTSKMFQ 426

  Fly   440 SCLSNGPEVQTSKCDNLKEGQQVSFTAQIQLLK-------C--PEDPRDWTQTIHISPVGINEVM 495
                   :.:|... :::.|:...:..|::.|:       |  |||.:.   .||:.| ..::.:
Human   427 -------KTRTGSF-HIRRGEVGIYQVQLRALEHVDGTHVCQLPEDQKG---NIHLKP-SFSDGL 479

  Fly   496 QIQLTMLCS-CPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDT 559
            ::...::|. |.||    :..:|::..||.:|..:||.|.|.:.:.|..|.||    |...::..
Human   480 KMDAGIICDVCTCE----LQKEVRSARCSFNGDFVCGQCVCSEGWSGQTCNCS----TGSLSDIQ 536

  Fly   560 SCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCEC 624
            .|..:. ....|||||.|.||.|.|:....    ..|:.||.|||.|.|....||:  |.|.|..
Human   537 PCLREG-EDKPCSGRGECQCGHCVCYGEGR----YEGQFCEYDNFQCPRTSGFLCN--DRGRCSM 594

  Fly   625 GRCKCKPGWTGSNCGCQESNDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCE--KCPT 687
            |:|.|:|||||.:|.|..||.||:...|| ||:|.|.||||.|.|  :.|..::...||  ....
Human   595 GQCVCEPGWTGPSCDCPLSNATCIDSNGG-ICNGRGHCECGRCHC--HQQSLYTDTICEINYSAI 656

  Fly   688 CSGRCQELKDCVQCQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQ----MCKFFDE-D 747
            ..|.|::|:.|||||.:.||| |.|..| ..|...|.:      :||.|..:    .|.|.|| |
Human   657 HPGLCEDLRSCVQCQAWGTGE-KKGRTC-EECNFKVKM------VDELKRAEEVVVRCSFRDEDD 713

  Fly   748 DCKFMFKYSEQGE------LHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK 800
            ||  .:.|:.:|:      ..|...:.|:||...|...|.: ::..:.|:.|.:||.||
Human   714 DC--TYSYTMEGDGAPGPNSTVLVHKKKDCPPGSFWWLIPL-LLLLLPLLALLLLLCWK 769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 147/479 (31%)
Integrin_B_tail 692..773 CDD:285239 30/91 (33%)
Integrin_b_cyt 803..843 CDD:285884
ITGB4XP_006721929.1 Integrin_beta 72..488 CDD:278776 146/477 (31%)
EGF_2 578..608 CDD:285248 15/31 (48%)
Integrin_B_tail 661..744 CDD:285239 31/92 (34%)
Calx-beta 1025..1119 CDD:281194
fn3 1163..1243 CDD:278470
FN3 1255..1348 CDD:238020
fn3 1617..1699 CDD:278470
fn3 1730..1815 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.920

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