DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and itgb4

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:825 Identity:271/825 - (32%)
Similarity:387/825 - (46%) Gaps:136/825 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCIQT-EGCAWCMQPDFKGQSRC-------Y 70
            |.:.|...:...||::  |......|.|..:.|..|||. .|||:|....|: ..||       .
Zfish     8 LAVGIFLLLLAATDSR--ADEVNHCTAARTKTCSECIQVGAGCAYCPDEVFE-HERCDLKENLEA 69

  Fly    71 QNTSSLCPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQS 135
            |..|.:...|      :..||..|.|:..|.|                               ||
Zfish    70 QKCSKIVNFE------SSRQIQENVKINEQLK-------------------------------QS 97

  Fly   136 SSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD 200
                               |:.||.|.:.|...|:..:::...:....|:|||.|||.|.||.||
Zfish    98 -------------------QVSPQLMSMTLLPGEEKEVEMEVFEPTRGPLDLYILMDFSNSMSDD 143

  Fly   201 KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPCANCTATYGFHHQMVLD 265
            ...|..:|:||:..:..:::::.:|||.|||||..|.....|..|.||.:|....:.|.:.:.|.
Zfish   144 LDNLKRMGEKLARLVGDLSDDYTIGFGKFVDKVTEPQTDMRPAKLAEPWSNSDPPFSFRNVIKLT 208

  Fly   266 KNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFHYAGDGK- 329
            .|||.|..:::...:||||||||||||||:|...|:.|||||:.:..||||||::.|||..||. 
Zfish   209 SNITSFRQKLQKERISGNLDAPEGGFDAILQTAVCQDQIGWRKDSTHLLVFSTESAFHYEADGAN 273

  Fly   330 -LGGVIAPNDGECHLSPKGEYTHSTLQDYPSI-SQINQKVKDNAINIIFAVTASQLSVYEKLVEH 392
             |.|::..||.:|||:..|.|||...|||||| :.:...||.|.|. |||||....|.||||.|:
Zfish   274 VLAGILDRNDEQCHLNVDGNYTHDVRQDYPSIPTLVRLLVKHNIIP-IFAVTNHSYSYYEKLHEY 337

  Fly   393 IQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMK-DNATGDVKITYFSSCLSNGPEVQTSKCDNL 456
            ...:...:|..||||::.::::.:..|.|.:.:: ::....|:...||   .:|   ..|:..|.
Zfish   338 FPIAELGQLQEDSSNILSILEKAFENIRSKISIRAEDRPKAVETKIFS---QSG---TFSEYGNF 396

  Fly   457 K--EGQQVSFTAQIQLLK-------CPEDPRDWTQTIHISPVGINEVMQIQLTMLC-SCPCE-NP 510
            |  .||...|..:::.|.       |..:..|...|:.:.|...:...:|...:|| :|.|| .|
Zfish   397 KITPGQTGKFKVRMKALNQVGEEPVCKVNQADRAGTLRVKPTTFSSAFKINAEVLCPTCDCEKTP 461

  Fly   511 GSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRG 575
            ..     .|..|:|||..:||.|.|...:.|..|.|||...|     |:....:...|..|||||
Zfish   462 VK-----NAVRCTGHGDLVCGKCQCYAGWLGPLCNCSAGAST-----DSVMCIERGKTEPCSGRG 516

  Fly   576 HCVCGACECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGC 640
            .|:||.|.|: .||..|   |.:|:.|...|:|....||:  :.|:|..|||.|.|||:|..|.|
Zfish   517 DCMCGTCVCY-NPNQFE---GPYCQFDKSQCQRFGGFLCN--ERGSCSMGRCVCSPGWSGEACEC 575

  Fly   641 QESNDTCMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCS-------GRCQELKDC 698
            ..|||:|....|| ||:..|.|:||.|:|      ..||  ....|||.       |.|:..:.|
Zfish   576 PTSNDSCRDSKGG-ICNDRGVCKCGRCEC------EHSG--LPLSPTCEANFQQQVGMCEAKRSC 631

  Fly   699 VQCQMYKTGELKNGDDCARNCTQ--FVPVGVEKVEIDETKDEQMCKFFDE-DDCKFMFKYS---- 756
            ||||.:.|||.|     .|.|.:  |..|.|:::|.|:...| .|.|.|| |||.:.:..:    
Zfish   632 VQCQAWSTGERK-----GRKCDECPFKIVRVDELEEDKNVIE-TCSFRDEDDDCTYHYNVNYPSN 690

  Fly   757 -EQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK 800
             ...|..|..::.|:||...| |.::..::..::|:||.:|..||
Zfish   691 ITDKEHRVLVKKKKDCPPAGF-LWLIPLIMFLMLLLGLLLLCCWK 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 153/481 (32%)
Integrin_B_tail 692..773 CDD:285239 29/88 (33%)
Integrin_b_cyt 803..843 CDD:285884
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776 154/483 (32%)
EGF_2 <468..490 CDD:285248 9/21 (43%)
EGF_2 545..573 CDD:285248 13/29 (45%)
Integrin_B_tail 625..709 CDD:285239 30/89 (34%)
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020
FN3 1331..1420 CDD:238020
fn3 1640..1720 CDD:278470
fn3 1751..1835 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1226
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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