DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mys and Itgb5

DIOPT Version :9

Sequence 1:NP_001284997.1 Gene:mys / 44885 FlyBaseID:FBgn0004657 Length:846 Species:Drosophila melanogaster
Sequence 2:NP_671480.2 Gene:Itgb5 / 257645 RGDID:628869 Length:799 Species:Rattus norvegicus


Alignment Length:846 Identity:310/846 - (36%)
Similarity:444/846 - (52%) Gaps:93/846 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCIQTE-GCAWCMQPDFKGQ----SR 68
            |.|.|  .|::..:||..          :.|..|...|..|:... .||||.:..|...    ||
  Rat    11 CLLGL--CALVPRLAGLN----------ICTSGSATSCEECLLIHPKCAWCSKEYFGNPRSIISR 63

  Fly    69 CYQNTSSLCPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYS 133
            |                              ..||.|...|.|..:...:||::...:...|...
  Rat    64 C------------------------------DLKANLIRNGCGGEIESPASSTHVLRNLPLSSKG 98

  Fly   134 QSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSME 198
            .|:.||            :::|:.||.:.::||..::...::...|.|.||||||||||||.||:
  Rat    99 SSAMGS------------DVIQMTPQEIAVSLRPGDQATFQLQVRQVEDYPVDLYYLMDLSLSMK 151

  Fly   199 DDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKNLVEPC------ANCTATYG 257
            ||...:.:||.||:|.|:::|:||.|||||||||.:.|:..|.|:....||      .||..::|
  Rat   152 DDLDNIRSLGTKLAEEMRKLTSNFRLGFGSFVDKDISPFSYTAPRYQTNPCIGYKLFPNCVPSFG 216

  Fly   258 FHHQMVLDKNITQFTNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGF 322
            |.|.:.|...:..|..||:...||.|.|||||||||::||..|:.:||||:.|..||||:||...
  Rat   217 FRHLLPLTDRVDSFNEEVRKQRVSRNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFTTDDVP 281

  Fly   323 HYAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYE 387
            |.|.||||||::.|:||:|||:...|||.|...||||::.:.:|:.:|.||:|||||.:...:|:
  Rat   282 HIALDGKLGGLVQPHDGQCHLNEANEYTASDQMDYPSLALLGEKLAENNINLIFAVTKNHYMLYK 346

  Fly   388 KLVEHIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMKD-NATGDVKITYFSSCLSNGPEVQTS 451
            .....|.|::...|..||.|:::|:...|..|.:.||:.. :...|:.:.:.::|..........
  Rat   347 NFTALIPGTTVEILHGDSKNIIQLIINAYSSIRAKVELSVWDQPEDLNLFFTATCQDGLSYPGQR 411

  Fly   452 KCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIGYQ 516
            ||:.||.|...||...::...||  .|..||:..:.|||..:.:|:::...|:|.|    |.|.:
  Rat   412 KCEGLKIGDTASFEVSVEARSCP--GRHTTQSFTLRPVGFRDSLQVEVAYNCTCGC----SAGLE 470

  Fly   517 VQANSCSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRGHCVCGA 581
            ..:..|||:||.:||:|.||.||.|.:|||...:..|.:.|  .|| ::.....|||||.|.|..
  Rat   471 PNSARCSGNGTYVCGLCECDPSYLGTRCECQEGENQSGYQN--LCR-EAEGKPLCSGRGECSCNQ 532

  Fly   582 CECHKRPNPIEIISGKHCECDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDT 646
            |.|.:  :....|.|..||||:|||.||:..||||  ||.|.||.|||..|:.|.||.|.....|
  Rat   533 CSCFE--SEFGRIYGPFCECDSFSCARNKGVLCSG--HGECHCGECKCHVGYIGDNCNCSTDIST 593

  Fly   647 CMPPGGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQCQMYKTGELKN 711
            |... .|:|||..|.|.||.|:||  :.|.| |..|||||||...|...:|||:|.:...|:..|
  Rat   594 CRAK-DGQICSDRGRCVCGQCQCT--EPGAF-GETCEKCPTCPDACSSKRDCVECSLLHQGKPDN 654

  Fly   712 GDDCARNCTQFVPVGVEKVEIDETKDEQ---MCKFFDEDDCKFMFKYSE--QGELHVYAQENKEC 771
             ..|...|...|...|:.:    .||:|   :|.:....||..||.|:|  .|:.::......||
  Rat   655 -QTCHHQCKDEVITWVDSI----VKDDQEAVLCFYKTAKDCVMMFSYTELPNGKSNLTVLREPEC 714

  Fly   772 PAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFEKERMNAKWDTGENPIYKQATS 836
            .:....:.|::.|:.:|:|||:|:|.:||||.|||||||||:|:.||..|:::...||:|::..|
  Rat   715 GSAPNAMTILLAVVGSILLVGMALLAIWKLLVTIHDRREFAKFQSERSRARYEMASNPLYRKPIS 779

  Fly   837 T 837
            |
  Rat   780 T 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mysNP_001284997.1 INB 45..505 CDD:197563 164/471 (35%)
Integrin_B_tail 692..773 CDD:285239 24/85 (28%)
Integrin_b_cyt 803..843 CDD:285884 18/35 (51%)
Itgb5NP_671480.2 INB 35..463 CDD:197563 164/471 (35%)
I-EGF_1 465..493 CDD:408172 13/31 (42%)
exchanger_TraA <479..>644 CDD:411343 81/175 (46%)
Integrin_B_tail 635..718 CDD:400356 24/87 (28%)
Integrin_b_cyt 743..781 CDD:400871 21/38 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223415at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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